PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK24732.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

LSD

Protein Properties

Length: 143aa MW: 15335.1 Da PI: 7.8264

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK24732.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.1	6e-13	54	78	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+CrtlL YP+GA+ V C++C+tV PK24732.1 54 CGHCRTLLKYPPGAKQVLCSCCQTV 78 ************************9 PP
2	zf-LSD1	36.9	6e-12	92	115	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 CggC +lL+YP+GAp V+C +C++ PK24732.1 92 CGGCTVLLMYPYGAPKVKCCSCHH 115 ***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	6.2E-16	51	81	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	8.3E-10	54	78	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.5E-9	89	117	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.1E-9	92	115	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
PPPPPPLPLQ PAPEQPPPPP PPPPGPPPPC LPPETPPPPM PIKMTSLEIA QMVCGHCRTL 60 LKYPPGAKQV LCSCCQTVNF VLEAHQVGQV KCGGCTVLLM YPYGAPKVKC CSCHHLTEIG 120 AHNERPPWSV QQGQPFPGPN HCY

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010108198.1	6e-49	protein LOL2
Swissprot	O65426	4e-38	LOL2_ARATH; Protein LOL2
TrEMBL	A0A2P5CBQ8	2e-51	A0A2P5CBQ8_PARAD; Zinc finger, LSD1-type
STRING	XP_010108198.1	2e-48	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13026	31	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	8e-38	lsd one like 2