PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK25011.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

HB-other

Protein Properties

Length: 532aa MW: 59679.3 Da PI: 8.0548

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK25011.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.8	1e-19	19	74	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t++q+ +Le+++++++yp++e++ eLA +lgLte+q++ WF+ rR k+k+ PK25011.1 19 KKRRLKTPSQVMALEKFYNEHKYPTEEMKSELAVQLGLTEKQISGWFCHRRLKDKR 74 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-21	3	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.281	15	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.75E-18	17	83	IPR009057	Homeodomain-like
SMART	SM00389	2.7E-20	17	79	IPR001356	Homeobox domain
CDD	cd00086	2.61E-18	19	74	No hit	No description
Pfam	PF00046	4.6E-17	19	74	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MEESSEAHSE EKKVSQDNKK RRLKTPSQVM ALEKFYNEHK YPTEEMKSEL AVQLGLTEKQ 60 ISGWFCHRRL KDKRVSKDEP CANGRQDRLS GVIQDLGSGL GQDSCGSTKH VDYRYVDPRE 120 VESQRLYGND FPAADLTSDK KSLYTERGMD DTSSESSSSL QDRLLTPIED PHSVETFRYL 180 TQDGPIAPLS SKGTRTMGYK PSGYLKVKNE IENAAITAVK RQLGKQYQED GPPLGVEFEA 240 LPPGAFESPI RDPVHEPYYV GNPVLSHPLN ISGLKKQPSP GSRYEINNSK LSSKDPYMQQ 300 EGPGIIHGIG HQEAKPSNLM RQKSTYIDHA GSLSGRNSSL DNYDDSSYNN NHHRKKSSKH 360 GVEGTSSDSF HNRLSHHSGK VPSKQAFSRV HDDDVSPEIV QRSEYFKPAV SARNYCEAPD 420 MEERGISTMM AQEDKFFGEG KTRKDVKVKM KHVNEMTVAK RGKADFSQQE NGTNSYVEIL 480 PHKNNTKGSA LEMPSSFSEE KLQKPVLQQS EVSGKAGRGF PRLVQFRESY GH

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MEESSEAHSE EKKVSQDNKK RRLKTPSQVM ALEKFYNEHK YPTEEMKSEL AVQLGLTEKQ  60
ISGWFCHRRL KDKRVSKDEP CANGRQDRLS GVIQDLGSGL GQDSCGSTKH VDYRYVDPRE  120
VESQRLYGND FPAADLTSDK KSLYTERGMD DTSSESSSSL QDRLLTPIED PHSVETFRYL  180
TQDGPIAPLS SKGTRTMGYK PSGYLKVKNE IENAAITAVK RQLGKQYQED GPPLGVEFEA  240
LPPGAFESPI RDPVHEPYYV GNPVLSHPLN ISGLKKQPSP GSRYEINNSK LSSKDPYMQQ  300
EGPGIIHGIG HQEAKPSNLM RQKSTYIDHA GSLSGRNSSL DNYDDSSYNN NHHRKKSSKH  360
GVEGTSSDSF HNRLSHHSGK VPSKQAFSRV HDDDVSPEIV QRSEYFKPAV SARNYCEAPD  420
MEERGISTMM AQEDKFFGEG KTRKDVKVKM KHVNEMTVAK RGKADFSQQE NGTNSYVEIL  480
PHKNNTKGSA LEMPSSFSEE KLQKPVLQQS EVSGKAGRGF PRLVQFRESY GH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	23	KKRRLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024028319.1	0.0	uncharacterized protein LOC112093665 isoform X1
TrEMBL	A0A2P5FIL4	0.0	A0A2P5FIL4_TREOI; Octamer-binding transcription factor
STRING	XP_010106869.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5792	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	7e-89	HB-other family protein