PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25073.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family FAR1
Protein Properties Length: 370aa    MW: 43190.2 Da    PI: 8.8445
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25073.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.21.4e-18179988
       FAR1  9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88
               +vGFs+rksk +k ++ng++++r f+Cs++g+re++k++ ++  r+raetr gC a++k+  +++++++v ++  eH+H 
  PK25073.1  1 KVGFSIRKSKGQKDNKNGRMIDRIFCCSCQGYREKDKRD-VEVIRHRAETRFGCLAMMKICSRQTNRYRVVEFIAEHTHV 79
               59**********************************999.999************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-15179IPR004330FAR1 DNA binding domain
PfamPF105514.3E-32203297IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
KVGFSIRKSK GQKDNKNGRM IDRIFCCSCQ GYREKDKRDV EVIRHRAETR FGCLAMMKIC  60
SRQTNRYRVV EFIAEHTHVT TSPSKSHLHR SHRRVTAVQA AEIDMADRSG ISPKESCELM  120
ARRAGGRENL GMIPVDYKNY LRTKRMTQMK IGDTGGVLEY LQRMQIQDPN FFYAIQVDVD  180
DLITNIFWAD AKMIQSYSYF GDVVSFDTTY KKNQDGRPFA MFLGVNNHKQ TTVFGAALLY  240
DETTQTFEWL FDTFATAMSG KKPKTILTDQ DAAMAEALGS QWPQTYHRLC IWHIYQNAAK  300
NLSTVFERFR EFSKEFSNCI YDYDEESEFI EAWNKMLAKY GLEDNKWLKK MYNLREKWAL  360
VYGRETFCAD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024930861.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_027060933.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_027124120.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2R6QX940.0A0A2R6QX94_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGXP_008246048.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-83FAR1-related sequence 5