PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25211.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 178aa    MW: 19336.1 Da    PI: 10.3748
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25211.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.1e-203887255
        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa++ l+g
  PK25211.1 38 RYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARTLRG 87
               69*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.6573895IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-223895IPR016177DNA-binding domain
SMARTSM003805.5E-3638101IPR001471AP2/ERF domain
CDDcd000187.48E-173895No hitNo description
PfamPF008472.8E-133887IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-323896IPR001471AP2/ERF domain
PRINTSPR003676.1E-113950IPR001471AP2/ERF domain
PRINTSPR003676.1E-116177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MRRGRGATTG RGVAPATQAA VETPAVDPNN GSGLKEVRYR GVRKRPWGRF AAEIRDPWKK  60
TRVWLGTFDS AEDAARAYDA AARTLRGPKA KTNFPSAAYS LAPPFCYQNH PTGVGADPLA  120
DHRMYGSNGG FDDHHHQNHP HHHQVDLQRP TSSSLSSTLE SFSGPRPPPL STGTVDPX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-203195772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295747.12e-57ethylene-responsive transcription factor 3-like
SwissprotO803396e-45ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A2P5AS613e-62A0A2P5AS61_PARAD; AP2/ERF transcription factor
STRINGXP_002531192.13e-53(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.18e-29ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]