PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25248.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 213aa    MW: 22911.8 Da    PI: 10.0769
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25248.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.45.7e-1656138186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  v  L+ea+++++   +r+klk+++We+v++++     +++  ++++qCk+k+e+++kry+ + +++ +       ++p++++l+
  PK25248.1  56 EWSEGAVSSLLEAYESKWVLRNRAKLKGHDWEDVARYVssraNSTKSPKTQTQCKNKIESMKKRYRSESTTDAS-------SWPLYSRLD 138
                5*************************************88777778889999***************9999886.......499998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.4E-1954138No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDKENSIHHH HQSPSLLPNN TTIAAPLTAI PKEESPRKPF NGGGGNGGGD RLKRDEWSEG  60
AVSSLLEAYE SKWVLRNRAK LKGHDWEDVA RYVSSRANST KSPKTQTQCK NKIESMKKRY  120
RSESTTDASS WPLYSRLDLL LRGNGVSPAV AAAAAAATTS SPAQPTLPPM PPSHLATNNP  180
PLLLLEPPPP LPAPPPLIGT AQNSHGSNGV ERL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095991.11e-83trihelix transcription factor ASIL2 isoform X2
TrEMBLA0A2P5BX033e-92A0A2P5BX03_PARAD; Trihelix transcription factor
STRINGXP_010095991.16e-83(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.14e-54sequence-specific DNA binding transcription factors