PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25269.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 128aa    MW: 13999.4 Da    PI: 9.3722
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25269.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.6e-201969256
        AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
               ++ GVr+++ +grWvAeI+d      ++ r +lg+f+taeeAa+a++ a+++l+g+
  PK25269.1 19 RFVGVRQRP-SGRWVAEIKD----SiQKVRLWLGTFDTAEEAARAYDDAARALRGA 69
               589******.7*********....4345*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.37E-201876No hitNo description
SMARTSM003801.1E-361982IPR001471AP2/ERF domain
PROSITE profilePS5103220.7451976IPR001471AP2/ERF domain
PfamPF008471.9E-141968IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-291976IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-212076IPR016177DNA-binding domain
PRINTSPR003671.4E-82031IPR001471AP2/ERF domain
PRINTSPR003671.4E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
TGGLRRKSSS TTSTRGHQRF VGVRQRPSGR WVAEIKDSIQ KVRLWLGTFD TAEEAARAYD  60
DAARALRGAN ARTNFELPPN QDDQNNNTNN NLEPFCFEQV CAPTSSAASE GLLGALKAKL  120
FDTNGDAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1617751271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661957.11e-50PREDICTED: uncharacterized protein LOC104881936
TrEMBLA0A438JJJ97e-50A0A438JJJ9_VITVI; Ethylene-responsive transcription factor RAP2-11
TrEMBLF6HUA61e-49F6HUA6_VITVI; Uncharacterized protein
STRINGVIT_02s0025g03170.t012e-50(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-20related to AP2 11