PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25434.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 227aa    MW: 25446.6 Da    PI: 9.7523
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25434.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-0585106223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C+ C+k F +   L  H+r H
  PK25434.1  85 ICHVCDKGFDSLRALFGHMRHH 106
                5*******************99 PP
2zf-C2H215.45.4e-05116137223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                +C+ Cgk F +    + H+++H
  PK25434.1 116 SCKECGKEFESLRAVTGHMKSH 137
                6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.8E-4531IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.45E-6635No hitNo description
SMARTSM003550.31931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66936IPR007087Zinc finger, C2H2
PfamPF139121.0E-5931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.02184106IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.88784111IPR007087Zinc finger, C2H2
SuperFamilySSF576673.21E-985137No hitNo description
Gene3DG3DSA:3.30.160.604.0E-485110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.0E-785107IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM003550.015115137IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18115142IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-4116139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
PfamPF139121.3E-6117139IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEKDQEQKHV CKFCNKSFLN GKVLGGHMRC HGAKNSTKTE KKLNNIVHTN MEGGERVGYG  60
LRVNPKKSCK ISGGSTQETS EQEIICHVCD KGFDSLRALF GHMRHHSGNK RRKMVSCKEC  120
GKEFESLRAV TGHMKSHSER FRVPIESSEK LFGDSQHSGG GTSGLVKKKR SRRSRYNNNN  180
NTAAANNNNK ITPNSSVSNL SECSYYDNEY DQQEVEEVAV SLLMLSK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879805.11e-64uncharacterized protein LOC107415907
TrEMBLA0A2P5ED784e-97A0A2P5ED78_TREOI; TFIIH C1-like domain containing protein
STRINGXP_010089610.15e-60(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-20C2H2-like zinc finger protein