PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK25436.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 217aa MW: 25414.7 Da PI: 4.6686

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK25436.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	89.1	7.6e-28	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrF Ptdeel+ ++L +kv + + ++i+ vd+ ++Pw++ +++++e+ ++yfFsk+ + ++t++gyWk+ +++++++ ++ PK25436.1 9 LPPGFRFCPTDEELILQFLYPKVFALPSAHPNIIPYVDLRLHQPWEFTgTALSSENMHYYFFSKTTE--------GKVTSNGYWKEMDMNEPIFVSgANN 100 79***********************999899**********95566566667788887644........568999*********987778 PP NAM 99 lvglkktLvfy......kgrapkgektdWvmheyrl 128 +vg+kk v+y +++ ++++t+Wvm+ey+l PK25436.1 101 KVGVKKYYVYYvtnhgyHQSPTSATETNWVMEEYNL 136 8******99877667888899*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-33	6	169	IPR003441	NAC domain
PROSITE profile	PS51005	34.702	9	171	IPR003441	NAC domain
Pfam	PF02365	6.1E-20	10	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MGDNQSVKLP PGFRFCPTDE ELILQFLYPK VFALPSAHPN IIPYVDLRLH QPWEFTGTAL 60 SSENMHYYFF SKTTEGKVTS NGYWKEMDMN EPIFVSGANN KVGVKKYYVY YVTNHGYHQS 120 PTSATETNWV MEEYNLCNNL ELMSTTICPT YKRRRKQKLD FKWVLCRVHE RKMEDISLKS 180 VQYEDDDNGT ELSCLDEMFL SALDDDDFEE ISMQILD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-20	7	172	18	169	NAC domain-containing protein 19
3swm_B	1e-20	7	172	18	169	NAC domain-containing protein 19
3swm_C	1e-20	7	172	18	169	NAC domain-containing protein 19
3swm_D	1e-20	7	172	18	169	NAC domain-containing protein 19
3swp_A	1e-20	7	172	18	169	NAC domain-containing protein 19
3swp_B	1e-20	7	172	18	169	NAC domain-containing protein 19
3swp_C	1e-20	7	172	18	169	NAC domain-containing protein 19
3swp_D	1e-20	7	172	18	169	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010090830.1	5e-74	NAC domain-containing protein 104
TrEMBL	A0A2P5E7M9	1e-103	A0A2P5E7M9_TREOI; NAC domain containing protein
STRING	XP_010090830.1	2e-73	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-43	xylem NAC domain 1