PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25573.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family LBD
Protein Properties Length: 208aa    MW: 22709.8 Da    PI: 8.6735
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25573.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.41.6e-40181181100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasn +kll ++p+++r+da+ sl+yeA ar+rdPvyG+v++i++lq+q+ +l+aela++++
  PK25573.1  18 PCGACKFLRRKCVKGCIFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPPHKRRDAVVSLCYEALARLRDPVYGCVSHIFTLQHQVVNLQAELAYVQA 117
                7***********************9989*********************************************************************998 PP

     DUF260 100 e 100
                +
  PK25573.1 118 K 118
                7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.54617119IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-3918116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
KMSSNGGSSG GSGGGGGPCG ACKFLRRKCV KGCIFAPYFD SEQGTAHFAA VHKVFGASNA  60
SKLLLRIPPH KRRDAVVSLC YEALARLRDP VYGCVSHIFT LQHQVVNLQA ELAYVQAKLS  120
TMQRLPPTQP PPQNLSPSYT DVVLNSNFSM SMQLDPFYHP QSSNEHTSLI INPGEDQPLY  180
DDDLQELGRQ LVSRCFPAGV KFRSNTSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-39141197111LOB family transfactor Ramosa2.1
5ly0_B4e-39141197111LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019012.11e-87LOB domain-containing protein 19
SwissprotO221324e-67LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A2P5B0A42e-96A0A2P5B0A4_TREOI; Lateral organ boundaries domain containing protein
STRINGXP_010092842.12e-83(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.16e-65LOB domain-containing protein 19