PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK25575.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C3H

Protein Properties

Length: 747aa MW: 81123.9 Da PI: 7.0632

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK25575.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.2e-07	327	347	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg PK25575.1 327 PCPEFRK-GACRRGDMCEYAHG 347 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	8.5E-19	61	206	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	9.79E-18	67	202	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.66E-16	108	199	No hit	No description
Pfam	PF12796	6.0E-10	109	178	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.9	109	202	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0034	109	139	IPR002110	Ankyrin repeat
PRINTS	PR01415	6.1E-5	110	125	IPR002110	Ankyrin repeat
SMART	SM00248	1.1E-4	144	176	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.701	144	179	IPR002110	Ankyrin repeat
PRINTS	PR01415	6.1E-5	163	177	IPR002110	Ankyrin repeat
SMART	SM00356	9.5E-6	322	348	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.981	327	349	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-4	327	347	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.3E-4	355	385	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	38	357	380	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence Send to blast
MALATASAFL AAGFAGFSAN KSMCCGSEKL KPISSSTPSP ISIIESRVTN IAMNHLTIQT 60 EDTFASLLEL AANNDIDGFK RSIERDPSSV DEPGLWYGRQ KGSKVMVNEQ RTPLMVAATY 120 GSIDVVQLIL SLSVADVNFH CGLDRSTALH CAASGGAKNA VDVVKLLLAA GADPNLVDGN 180 GHFPLDVIVV HPKLQDVKLA LEELLKTNGS AMEHTLTVST RTVNSRSPTL SSSSENGSPL 240 GQDFNSSPSR SKFIDFPVSE KKEYPVDPSL PDIKNSIYST DEFRMYSFKV RPCSRAYSHD 300 WTECPFVHPG ENARRRDPRK FHYSCVPCPE FRKGACRRGD MCEYAHGVFE CWLHPAQYRT 360 RLCKDGTSCA RRVCFFAHTP EELRPLYVST GSAVPSPRTG TSGAAAMDFA AAMNMLPGSP 420 SSMSVMSPSP FTPPISPSGN GMSHASGGWP QPNVPALHLP GSNLQSSRLR SSLNARDIPT 480 ESFDLLSDFD MQQQHQLLNE LSCLSQPSFS SNSLNRSGRM KTLTPSNLDD LFSAESSSPR 540 YSDQGLPSAV FSPTHKSAVI NQFQQQQTML SPINTNFSPK NDHPLMHQSS FGAPSSGRMS 600 PRNMEPISPM GSRVSMLAQR DKQQFRSLSS RELGSNSAST VGSPVNSWSK WGSSNGKPDW 660 AVSTDELGKH RRSSSFELGN NGEEPDLSWV QSLVKESPTE MKEKSKAPIS GVSANNTSSN 720 ETEGVDHAVL GAWLEQMQLD HLVAQQN

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence Send to blast

MALATASAFL AAGFAGFSAN KSMCCGSEKL KPISSSTPSP ISIIESRVTN IAMNHLTIQT  60
EDTFASLLEL AANNDIDGFK RSIERDPSSV DEPGLWYGRQ KGSKVMVNEQ RTPLMVAATY  120
GSIDVVQLIL SLSVADVNFH CGLDRSTALH CAASGGAKNA VDVVKLLLAA GADPNLVDGN  180
GHFPLDVIVV HPKLQDVKLA LEELLKTNGS AMEHTLTVST RTVNSRSPTL SSSSENGSPL  240
GQDFNSSPSR SKFIDFPVSE KKEYPVDPSL PDIKNSIYST DEFRMYSFKV RPCSRAYSHD  300
WTECPFVHPG ENARRRDPRK FHYSCVPCPE FRKGACRRGD MCEYAHGVFE CWLHPAQYRT  360
RLCKDGTSCA RRVCFFAHTP EELRPLYVST GSAVPSPRTG TSGAAAMDFA AAMNMLPGSP  420
SSMSVMSPSP FTPPISPSGN GMSHASGGWP QPNVPALHLP GSNLQSSRLR SSLNARDIPT  480
ESFDLLSDFD MQQQHQLLNE LSCLSQPSFS SNSLNRSGRM KTLTPSNLDD LFSAESSSPR  540
YSDQGLPSAV FSPTHKSAVI NQFQQQQTML SPINTNFSPK NDHPLMHQSS FGAPSSGRMS  600
PRNMEPISPM GSRVSMLAQR DKQQFRSLSS RELGSNSAST VGSPVNSWSK WGSSNGKPDW  660
AVSTDELGKH RRSSSFELGN NGEEPDLSWV QSLVKESPTE MKEKSKAPIS GVSANNTSSN  720
ETEGVDHAVL GAWLEQMQLD HLVAQQN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010092985.1	0.0	zinc finger CCCH domain-containing protein 30 isoform X1
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2P5F1N5	0.0	A0A2P5F1N5_TREOI; Transmembrane protein
STRING	XP_010092985.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1732	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]