PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK25661.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

SBP

Protein Properties

Length: 1052aa MW: 116612 Da PI: 8.4103

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK25661.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.7	1e-40	136	213	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls ak+yhrrhkvCe hsk++++lv++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ PK25661.1 136 MCQVDNCKEDLSAAKDYHRRHKVCELHSKSTKALVANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 213 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.6E-34	131	198	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.821	134	211	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.44E-37	135	215	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.4E-29	137	210	IPR004333	Transcription factor, SBP-box
CDD	cd00204	3.39E-6	812	954	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.7E-4	830	954	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.03E-6	853	951	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1052 aa Download sequence Send to blast
MEEAGAQVAP PIFIHRTLSV MGKKRDLPYQ TPNFQQRFSN PNPVDNWNPK VWEWDTVRFL 60 AKPLDSGSGA ATVNADLAKT EEPSATPVTL KNKTPEVTDA TLRLNLGGGF TSGDEPGSRP 120 NKRVRSGSPG STTYPMCQVD NCKEDLSAAK DYHRRHKVCE LHSKSTKALV ANQMQRFCQQ 180 CSRFHPLSEF DEGKRSCRRR LAGHNRRRRK TQPDDVGSRL LLPGDRDNKT NGHLDIFNLL 240 AAVARAQGKN DDKNMICSPL LDKEQLLQIL SKINSLPLPM DLAAKLHNLA SLSRKIPDQT 300 SSDHYDKLNG RASQSTMDLL AALSATLAPS APDALATLSQ RSSPSSDSGK TKLNCHDQAN 360 SLVLQKRSPQ ELPSLGGDRS STSYQSPMED SDCQAQETRV NLPLQLFSSS PETDSPPKLA 420 SSRKYFSSDS SNPIEERSPS SSPPVMQTLF PMQTMAETVK SEKMSASRET NANVESSRIN 480 ECNMPFDLFR GSNKGTEAAS IQSVPHQAGY TSSGSDHSPS SLNSDVQDRT GRILFKLFDK 540 DPSHFPGTLR TQIFNWLSNS PSEMESYIRP GCVILSVYVS MPSAAWEQLQ ENLLQRLSSL 600 VHSSASDFWR NGRFLVHAGR QLASHKDGKF RLCKSWKTWS SPELISVTPL AVVGGRETSL 660 ILRGRNLSTL GTKIHCTDKG VYTTMEVRVS TNQGTMYEEI SLCGFRTHDA SPSLFGRCFI 720 EVENGFKGNS FPVIIADASI CKELKVLEST FQGERKVSEV IAEDENHDDG RPSSKEEVLH 780 FLNELGWLFQ RKRASSFLNG PCYSLGRFKF LLTFSVERNC SSLIKTLLDI LVERNMDENE 840 LSRETVEMLS EVQLLHRAVK RKCKKMVDLL INYSVIGSDV VSKKYIFPPN HVGPGYITPL 900 HLAACMSSSD EMIDALTNDP QEIGLNSWNS LLDANGQSPY AYAVMTNNQS YNKLVARKLD 960 DRTNGQITVT VGNTMSTEYQ HGSRRSCAKC AAAATKYYRR VPASQGLLQR PYVHSMLAIA 1020 AVCVCVCLFL RGLPDIGAVA PFKWENLDYG TI

Sequence ? help Back to Top

Protein Sequence Length: 1052 aa Download sequence Send to blast

MEEAGAQVAP PIFIHRTLSV MGKKRDLPYQ TPNFQQRFSN PNPVDNWNPK VWEWDTVRFL  60
AKPLDSGSGA ATVNADLAKT EEPSATPVTL KNKTPEVTDA TLRLNLGGGF TSGDEPGSRP  120
NKRVRSGSPG STTYPMCQVD NCKEDLSAAK DYHRRHKVCE LHSKSTKALV ANQMQRFCQQ  180
CSRFHPLSEF DEGKRSCRRR LAGHNRRRRK TQPDDVGSRL LLPGDRDNKT NGHLDIFNLL  240
AAVARAQGKN DDKNMICSPL LDKEQLLQIL SKINSLPLPM DLAAKLHNLA SLSRKIPDQT  300
SSDHYDKLNG RASQSTMDLL AALSATLAPS APDALATLSQ RSSPSSDSGK TKLNCHDQAN  360
SLVLQKRSPQ ELPSLGGDRS STSYQSPMED SDCQAQETRV NLPLQLFSSS PETDSPPKLA  420
SSRKYFSSDS SNPIEERSPS SSPPVMQTLF PMQTMAETVK SEKMSASRET NANVESSRIN  480
ECNMPFDLFR GSNKGTEAAS IQSVPHQAGY TSSGSDHSPS SLNSDVQDRT GRILFKLFDK  540
DPSHFPGTLR TQIFNWLSNS PSEMESYIRP GCVILSVYVS MPSAAWEQLQ ENLLQRLSSL  600
VHSSASDFWR NGRFLVHAGR QLASHKDGKF RLCKSWKTWS SPELISVTPL AVVGGRETSL  660
ILRGRNLSTL GTKIHCTDKG VYTTMEVRVS TNQGTMYEEI SLCGFRTHDA SPSLFGRCFI  720
EVENGFKGNS FPVIIADASI CKELKVLEST FQGERKVSEV IAEDENHDDG RPSSKEEVLH  780
FLNELGWLFQ RKRASSFLNG PCYSLGRFKF LLTFSVERNC SSLIKTLLDI LVERNMDENE  840
LSRETVEMLS EVQLLHRAVK RKCKKMVDLL INYSVIGSDV VSKKYIFPPN HVGPGYITPL  900
HLAACMSSSD EMIDALTNDP QEIGLNSWNS LLDANGQSPY AYAVMTNNQS YNKLVARKLD  960
DRTNGQITVT VGNTMSTEYQ HGSRRSCAKC AAAATKYYRR VPASQGLLQR PYVHSMLAIA  1020
AVCVCVCLFL RGLPDIGAVA PFKWENLDYG TI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-32	127	210	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010094493.1	0.0	squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2P5DIW9	0.0	A0A2P5DIW9_TREOI; SBP-box transcription factor
STRING	XP_010094493.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9694	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]