PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK25743.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

ERF

Protein Properties

Length: 63aa MW: 7120.75 Da PI: 10.6024

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK25743.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.6	2.7e-17	2	46	9	56
AP2 9 dkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ +g+++AeIrd + ng +r++lg+f taeeAa+a+++a+ +++g+ PK25743.1 2 RP-WGKFAAEIRDS-NrNG--ARIWLGTFATAEEAARAYDRAAFSMRGP 46 56.********4.4254..***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.4E-12	1	45	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.192	1	53	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.84E-21	1	54	IPR016177	DNA-binding domain
SMART	SM00380	1.1E-27	1	59	IPR001471	AP2/ERF domain
CDD	cd00018	1.06E-22	1	55	No hit	No description
Gene3D	G3DSA:3.30.730.10	3.4E-27	1	54	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
RRPWGKFAAE IRDSNRNGAR IWLGTFATAE EAARAYDRAA FSMRGPFAIL NFPNDYPNLS 60 VPX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	9e-27	1	56	20	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010111910.1	5e-32	ethylene-responsive transcription factor ERF096
Swissprot	Q9LTC5	4e-28	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A2P5CNI8	1e-30	A0A2P5CNI8_PARAD; AP2/ERF transcription factor
TrEMBL	A0A2P5E849	1e-30	A0A2P5E849_TREOI; AP2/ERF transcription factor
TrEMBL	W9SJP6	1e-30	W9SJP6_9ROSA; Ethylene-responsive transcription factor
STRING	XP_010111910.1	2e-31	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	8e-17	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]