PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK25888.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 129aa MW: 14274.7 Da PI: 9.9915

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK25888.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116	1.5e-36	4	61	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++lkcprCds+ntkfCyynny+ sqPr+fC++C+r+WtkGG+lrnvPvGggr++++ PK25888.1 4 PEQLKCPRCDSSNTKFCYYNNYNKSQPRHFCRTCKRHWTKGGTLRNVPVGGGRKNKRL 61 6799***********************************************9776654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-24	2	60	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-32	6	59	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.41	7	61	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	9	45	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
XPAPEQLKCP RCDSSNTKFC YYNNYNKSQP RHFCRTCKRH WTKGGTLRNV PVGGGRKNKR 60 LKKSSAATAT ATAVAAATAN SDINSTVLFN DDHDQKTISE ILYQAVMVRP PPPPAPEQLK 120 CPRCDSSNX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:30626969}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium (PubMed:30626969). Induced by the transcription factor MONOPTEROS (MP) in cells relevant for root initiation, and later in vascular tissues and hypophysis (PubMed:20220754). {ECO:0000269\|PubMed:20220754, ECO:0000269\|PubMed:30626969}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021599985.1	7e-42	dof zinc finger protein DOF1.4-like
Swissprot	Q84TE9	2e-30	DOF53_ARATH; Dof zinc finger protein DOF5.3
TrEMBL	A0A3S8TMD1	2e-44	A0A3S8TMD1_BOENI; Dof transcription factor 05
STRING	cassava4.1_034118m	3e-41	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-31	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]