PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25933.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 84aa    MW: 9624.67 Da    PI: 10.5062
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25933.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY826.1e-264184245
               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSST CS
       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedp 45
               dDgy+WrKYGqK++k++++prsYYrCt ++C++kk+vers edp
  PK25933.1 41 DDGYKWRKYGQKSIKNTPNPRSYYRCTNPRCNAKKQVERSMEDP 84
               8***************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-243284IPR003657WRKY domain
PROSITE profilePS5081123.4793584IPR003657WRKY domain
SuperFamilySSF1182903.27E-223684IPR003657WRKY domain
SMARTSM007746.3E-204084IPR003657WRKY domain
PfamPF031063.3E-204182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
XPAPASRNSL LERGLMMSSK SIDNKYTLKI KSSATNNGMT DDGYKWRKYG QKSIKNTPNP  60
RSYYRCTNPR CNAKKQVERS MEDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-1739841661Probable WRKY transcription factor 4
2lex_A1e-1739841661Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418023.13e-34PREDICTED: probable WRKY transcription factor 49 isoform X2
SwissprotQ9FHR72e-27WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLA0A2P5DS381e-33A0A2P5DS38_TREOI; WRKY domain containing protein
STRINGXP_010107303.19e-33(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.17e-30WRKY DNA-binding protein 49