PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25970.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 254aa    MW: 27698.3 Da    PI: 5.8276
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25970.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-1863112255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  PK25970.1  63 SFRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFPTAEMAARAHDVAALAIKG 112
                69****998.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.9E-4063126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-3263121IPR001471AP2/ERF domain
PfamPF008471.0E-1163112IPR001471AP2/ERF domain
PROSITE profilePS5103222.98563120IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-2164120IPR016177DNA-binding domain
CDDcd000182.59E-3564121No hitNo description
PRINTSPR003673.4E-106475IPR001471AP2/ERF domain
PRINTSPR003673.4E-1086102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVNQEWDFTP SSSSSLQQPK NNSKLRMISS SSSDHDHGHS NYKAKTTSST SLLNNGETQH  60
TTSFRGVRMR QWGKWVSEIR EPKKKSRIWL GTFPTAEMAA RAHDVAALAI KGSSAHLNFP  120
EIAPELPRPA SSSPKDIQAA AAKAAAYCTN NLSATTSSSE DGNLTLSSPD SSTTHETSSF  180
NSTSPLLADN VDGDDTFFDL PDLLVDVSNS KKQNGEFCAY YSPWPLDGAV DNHTALIGCS  240
RLINDQDYSL SWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1664120360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001450.15e-58PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ74e-52ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2P5B3061e-76A0A2P5B306_PARAD; AP2/ERF domain containing protein
STRINGPOPTR_0001s15550.16e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.17e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]