PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26075.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 269aa    MW: 28771.2 Da    PI: 5.6057
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26075.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.71e-3072156187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW++qe+laL+++r+em++ +r++ lk+plWe+vs+k++e g++rs k+Ckek+en++k+yk++keg+ +r  ++ +t+++f++lea
  PK26075.1  72 RWPRQETLALLRIRSEMDTVFRDATLKGPLWEDVSRKLAELGYKRSGKKCKEKFENVHKYYKRTKEGRAGR--QDGKTYKFFTELEA 156
                8********************************************************************98..56667******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.10E-2971136No hitNo description
PROSITE profilePS500906.84171129IPR017877Myb-like domain
PfamPF138371.3E-2171157No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
XGGGVSLMED TTGTTGGTES AMEVQATGSG GVEAASPISS RPPAASSLNL DEYMAMSSGG  60
GGGGGSSGGG NRWPRQETLA LLRIRSEMDT VFRDATLKGP LWEDVSRKLA ELGYKRSGKK  120
CKEKFENVHK YYKRTKEGRA GRQDGKTYKF FTELEALHAF NQPHHQTLPP PLPSQPSLGV  180
GISNPMPISS FRAPNITITT PPPPNYPTHP PPQPQPQPPQ PQQPQHQQQP ITTAAAPIPA  240
LSFSSNTASS SHGSEDDDDE DDNEDDVFX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122KRSGKKCKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419358.16e-70trihelix transcription factor GTL1 isoform X2
TrEMBLA0A2N9I9225e-71A0A2N9I922_FAGSY; Uncharacterized protein
STRINGEMJ115465e-69(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.11e-45GT-2-like 1