PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK26322.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

SRS

Protein Properties

Length: 404aa MW: 44530.9 Da PI: 8.1561

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK26322.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	26.5	1.9e-08	71	107	5	41
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvks 41 + +C++CGn a+ C +e C+ CC C+ hv PK26322.1 71 KPKCKQCGNVARSRCPYESCKSCCAKAQNPCHIHVLK 107 569*******************************954 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.4E-6	73	116	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MAASPTLSNN SSDTATTAST AVALSIPPSS ATTTATATAV AAPISVPSVI PAVNTVNRTD 60 TPPKTLRGLN KPKCKQCGNV ARSRCPYESC KSCCAKAQNP CHIHVLKANA TFPDKAPTSS 120 SPLFDQQSTD ASSSGNSHRV ASYRHLSSSF SQFSNVQIPV RSRKPLTRKD AAAINEWRFA 180 KLKEYKERSI EVENESFDRY MQNVNLLEEL FSVKSSPDRS NDDESSIPNR NPASMEDGYD 240 AAFSGLKLKM RSNPLRTSNF RKRIHQIVDR GLKKLQKSGL DGCDNGPVDP KELDKGPKSE 300 EDLWAERAST LNELVDKLNK ARNEEDLKSC LEVKSQLFNH HNKEIQLESR DIKSLTEETG 360 KNDLEVSRKV NFSLPLLITP TEIDLETLRH VDAHFSSLDG IESL

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MAASPTLSNN SSDTATTAST AVALSIPPSS ATTTATATAV AAPISVPSVI PAVNTVNRTD  60
TPPKTLRGLN KPKCKQCGNV ARSRCPYESC KSCCAKAQNP CHIHVLKANA TFPDKAPTSS  120
SPLFDQQSTD ASSSGNSHRV ASYRHLSSSF SQFSNVQIPV RSRKPLTRKD AAAINEWRFA  180
KLKEYKERSI EVENESFDRY MQNVNLLEEL FSVKSSPDRS NDDESSIPNR NPASMEDGYD  240
AAFSGLKLKM RSNPLRTSNF RKRIHQIVDR GLKKLQKSGL DGCDNGPVDP KELDKGPKSE  300
EDLWAERAST LNELVDKLNK ARNEEDLKSC LEVKSQLFNH HNKEIQLESR DIKSLTEETG  360
KNDLEVSRKV NFSLPLLITP TEIDLETLRH VDAHFSSLDG IESL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024030663.1	0.0	uncharacterized protein LOC21406123
TrEMBL	A0A315A1E8	1e-168	A0A315A1E8_PRUYE; Uncharacterized protein
TrEMBL	A0A498JQC2	1e-168	A0A498JQC2_MALDO; Uncharacterized protein
STRING	XP_009369678.1	1e-170	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7690	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	2e-97