PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26573.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 70aa    MW: 8444.64 Da    PI: 9.6836
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26573.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS53.93.4e-17370296362
       GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362
                nv+aceg++r+er et+++W++r  +aG+k++pls++++k++k +++++  ++++ v+e+++++++gW
  PK26573.1   3 NVIACEGSKRIERPETYKQWHARNLRAGLKQLPLSQEIMKKVKKMMKETCyQKEFLVDEDNQWMLQGW 70 
                9*****************************************998877655999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.705161IPR005202Transcription factor GRAS
PfamPF035141.2E-14370IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
XLNVIACEGS KRIERPETYK QWHARNLRAG LKQLPLSQEI MKKVKKMMKE TCYQKEFLVD  60
EDNQWMLQGW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018850477.19e-30PREDICTED: scarecrow-like protein 14
SwissprotP0C8835e-24SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A2P5DQI71e-33A0A2P5DQI7_PARAD; GRAS transcription factor
STRINGXP_010256894.16e-28(Nelumbo nucifera)
STRINGGSMUA_Achr6P34090_0017e-28(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14801813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.13e-24GRAS family protein