PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26630.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 369aa    MW: 40862.1 Da    PI: 7.5571
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26630.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.8e-0897116626
                -SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                C++++r G C +Gd+C FaHg
  PK26630.1  97 CPDYRR-GGCGRGDSCEFAHG 116
                ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.22E-590120IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-591117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.60592118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-696118IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-697116IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287126150IPR000571Zinc finger, CCCH-type
SMARTSM003562.4126149IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MFSNGSPRLI SPGHDDTTTS ALFQKFLPYN NPGEGESDDD AGGSDPYSSD HFRMYEFKVR  60
RCTRSRSHDW TDCPFAHPGE KARRRDPRRH HYSGMVCPDY RRGGCGRGDS CEFAHGVFEC  120
WLHPARYRTE ACKDGKNCKR KVCFFAHTPR QLRILPLHSN GSSSEMASPV TSKKKIKYPI  180
SLNNNNSPNS NHCCAFCSCH NNSSPTSTLM GISHFSPPMS PEKFSPISAY KEHYAAAAAA  240
AANGHYSGQG AVSYKEALTD LMSSIESMNF NEAASPISPM SVATTGDRNH PWVDVLPFNS  300
GAEDQQQFVL SPSTPSYPSG SENFSHWSSK RYNDIVNENH NNKLNKLNEV NNAGSGSDPD  360
LGWVNDLLM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023889635.11e-125LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA11e-88C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2P5DNI40.0A0A2P5DNI4_TREOI; Zinc finger, CCCH-type
STRINGPOPTR_0017s04510.11e-117(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.15e-86C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]