PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK26637.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C3H

Protein Properties

Length: 410aa MW: 45549.4 Da PI: 6.8836

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK26637.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41	3.2e-13	70	92	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f+++tGtCk+G++CkF+H+ PK26637.1 70 EDCSFYLKTGTCKFGSNCKFNHP 92 89********************8 PP
2	zf-CCCH	28.2	3.3e-09	116	139	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 ++++C++++r+G Ck+G Ck++H PK26637.1 116 GQSECKYYLRSGGCKFGKACKYNH 139 7899******************** PP
3	zf-CCCH	39.6	8.9e-13	166	189	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++++rtG CkyG++C+F+H+ PK26637.1 166 EKECPYYMRTGSCKYGGNCRFNHP 189 679********************9 PP
4	zf-CCCH	26.2	1.4e-08	301	327	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ff++tG Ck+ ++Ck++H++ PK26637.1 301 PGQPECTFFLKTGDCKFKSNCKYHHPK 327 5789*********************96 PP
5	zf-CCCH	34.2	4.3e-11	349	372	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++r+G+Ck+G+ Ck+ H+ PK26637.1 349 QNICTYYSRYGICKFGPACKYDHP 372 679********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	8.11E-7	65	94	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.1E-6	66	93	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.582	66	94	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-10	70	92	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-5	72	91	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0029	114	141	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.854	114	142	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.7E-7	116	139	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-5	118	143	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.9E-4	120	141	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.27E-6	163	190	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.197	163	191	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.3E-6	165	190	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.1E-10	166	189	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-5	169	188	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.427	300	328	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.1E-4	300	327	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.9E-6	302	327	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.97E-5	304	328	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-6	344	372	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.68	346	374	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.1E-5	346	373	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-8	349	372	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
DNDDDDDDDD DGKREVEEND DEDGGVGENK SGNETENGSE VNNGVGEMEK KNGYGGGIRK 60 YQYPVRPEAE DCSFYLKTGT CKFGSNCKFN HPIRKRTNQG AREKVKERED STEKPGQSEC 120 KYYLRSGGCK FGKACKYNHT RGKTSAAPLA PVLEFNFVGL PIRVGEKECP YYMRTGSCKY 180 GGNCRFNHPD PTDAAAGSDT SAGYGNGRPV SLQGARQSTL PSWSSPRSLN ETAPFMPMML 240 SPNQGVPSQN SEWNGYQAPV YLPDRNLPPP PAYVMNNPVT ETNIYQHHPP QKLMEEYPER 300 PGQPECTFFL KTGDCKFKSN CKYHHPKKTA MGASPCTLSD KGLPLRPDQN ICTYYSRYGI 360 CKFGPACKYD HPVQQTPTMS SVENQPPIYS NLAGEGARRS RNETTIQQLV

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

DNDDDDDDDD DGKREVEEND DEDGGVGENK SGNETENGSE VNNGVGEMEK KNGYGGGIRK  60
YQYPVRPEAE DCSFYLKTGT CKFGSNCKFN HPIRKRTNQG AREKVKERED STEKPGQSEC  120
KYYLRSGGCK FGKACKYNHT RGKTSAAPLA PVLEFNFVGL PIRVGEKECP YYMRTGSCKY  180
GGNCRFNHPD PTDAAAGSDT SAGYGNGRPV SLQGARQSTL PSWSSPRSLN ETAPFMPMML  240
SPNQGVPSQN SEWNGYQAPV YLPDRNLPPP PAYVMNNPVT ETNIYQHHPP QKLMEEYPER  300
PGQPECTFFL KTGDCKFKSN CKYHHPKKTA MGASPCTLSD KGLPLRPDQN ICTYYSRYGI  360
CKFGPACKYD HPVQQTPTMS SVENQPPIYS NLAGEGARRS RNETTIQQLV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024025011.1	0.0	zinc finger CCCH domain-containing protein 43
Swissprot	Q9STM4	1e-127	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A2P5BA34	0.0	A0A2P5BA34_PARAD; Zinc finger, CCCH-type
STRING	EOY22360	1e-178	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4156	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-129	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]