PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26637.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 192aa    MW: 21229.9 Da    PI: 8.0452
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26637.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.71.7e-12122526
               --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
               +C++++rtG CkyG++C+F+H+
  PK26637.2  1 ECPYYMRTGSCKYGGNCRFNHP 22
               6********************9 PP
2zf-CCCH27.65.1e-09134160127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C ff++tG Ck+ ++Ck++H++
  PK26637.2 134 PGQPECTFFLKTGDCKFKSNCKYHHPK 160
                5789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006424.2E-10122IPR000571Zinc finger, CCCH-type
SMARTSM003560.019123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5221IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427133161IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4133160IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6135160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5137161IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
ECPYYMRTGS CKYGGNCRFN HPDPTDAAAG SDTSAGYGNG RPVSLQGARQ STLPSWSSPR  60
SLNETAPFMP MMLSPNQGVP SQNSEWNGYQ APVYLPDRNL PPPPAYVMNN PVTETNIYQH  120
HPPQKLMEEY PERPGQPECT FFLKTGDCKF KSNCKYHHPK KTAMGASPCT LSDKGLPLRP  180
VILFTEQSIS SL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024025011.15e-94zinc finger CCCH domain-containing protein 43
SwissprotQ9STM45e-59C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2P5BA341e-107A0A2P5BA34_PARAD; Zinc finger, CCCH-type
STRINGEOY223602e-87(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-61C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]