PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26639.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family SBP
Protein Properties Length: 176aa    MW: 19670.5 Da    PI: 9.5151
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26639.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.85.8e-4258135178
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                +Cq+e+C adls+ak+yhrrhkvCe+hska+ v+vsgl+qrfCqqCsrfhe+sefD++krsCrrrLa+hnerrrk++ 
  PK26639.1  58 RCQAERCGADLSDAKRYHRRHKVCEFHSKASIVFVSGLQQRFCQQCSRFHEISEFDDAKRSCRRRLAGHNERRRKSSV 135
                6**************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.1E-3453120IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.1856133IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-3957137IPR004333Transcription factor, SBP-box
PfamPF031101.7E-3159132IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
NEDEEVVLGG ESGESSGSLV MNHDKDKRKR GAGAPYSSSS SSSRASGGGG GGDVSPARCQ  60
AERCGADLSD AKRYHRRHKV CEFHSKASIV FVSGLQQRFC QQCSRFHEIS EFDDAKRSCR  120
RRLAGHNERR RKSSVESYGD AKTSKETQQF NRSEFDDQQR PKYLGSSTYK HLHFRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-3849132184squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260271.13e-51PREDICTED: squamosa promoter-binding protein 1
RefseqXP_018850782.16e-51PREDICTED: squamosa promoter-binding-like protein 3
TrEMBLA0A2P5F0705e-65A0A2P5F070_TREOI; SBP-box transcription factor
STRINGXP_010260271.11e-50(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.21e-41squamosa promoter binding protein-like 4