PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26651.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family AP2
Protein Properties Length: 368aa    MW: 41198.7 Da    PI: 7.7373
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26651.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2507.6e-1652111155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  PK26651.1  52 SIYRGVTRHRWTGRYEAHLWDkNCWNDsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 111
                57*******************999955566446*************************98 PP
2AP251.23.2e-16154205155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  PK26651.1 154 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 205
                89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-1752121IPR016177DNA-binding domain
PfamPF008477.3E-1252111IPR001471AP2/ERF domain
CDDcd000181.54E-1152121No hitNo description
SMARTSM003804.8E-2853125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1653120IPR001471AP2/ERF domain
PROSITE profilePS5103220.36353119IPR001471AP2/ERF domain
PRINTSPR003674.3E-65465IPR001471AP2/ERF domain
CDDcd000184.69E-24154215No hitNo description
PfamPF008475.9E-12154205IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17154215IPR016177DNA-binding domain
SMARTSM003801.2E-24155219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17155214IPR001471AP2/ERF domain
PROSITE profilePS5103218.334155213IPR001471AP2/ERF domain
PRINTSPR003674.3E-6195215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAKICRKTQK NSPSTAEINK TTNKGNKSSS SSKVKKRTRK SIPRDSPPRR SSIYRGVTRH  60
RWTGRYEAHL WDKNCWNDSQ NKKGRQVYLG AYDDEEAAAH AYDLAALKYW GQDTVLNFPL  120
STYEEEMKEM EGQSKEEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY  180
LYLGTYATQE EAATAYDMAA IEYRGLNAVT NFDLSRYIKW LRPTTQDNVP NNIFQPNPNE  240
DLISNPNSNP NEGLGLPSSS SVDDLVAVGA PTCNSGCAGA PSSALGLLLQ STKFKEMLER  300
TNLGVDCPSS TSSETEPPRG RSFPEDIQTY FDCQDSCSYT EGDDILFGDL GNTFPINAPM  360
FHCEELDA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028518.11e-179AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-117AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2P5CIQ70.0A0A2P5CIQ7_PARAD; AP2/ERF transcription factor
STRINGXP_010107183.11e-174(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.16e-92ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]