PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK26655.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 154aa MW: 16613.1 Da PI: 9.5507

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK26655.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.5	1.3e-37	35	93	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++ +kcprC+s ntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+rk k++ PK26655.1 35 KAPQKCPRCESLNTKFCYYNNYSLSQPRFFCKTCRRYWTQGGTLRNVPVGGGCRKGKRA 93 56789**************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.2E-33	37	92	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-20	37	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.295	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MQSEKDQEAE EMMMKQKNGN SNDNNNNNNG NENNKAPQKC PRCESLNTKF CYYNNYSLSQ 60 PRFFCKTCRR YWTQGGTLRN VPVGGGCRKG KRARTTTGAA IAANMASTSS TTSSSEGGGE 120 NYSRQLLAQA SVSGGGGGGA GDVLPRHQNQ TNNP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447707.1	2e-38	PREDICTED: dof zinc finger protein DOF1.2-like
Refseq	XP_012447708.1	2e-38	PREDICTED: dof zinc finger protein DOF1.2-like
Refseq	XP_012447709.1	2e-38	PREDICTED: dof zinc finger protein DOF1.2-like
Refseq	XP_012447710.1	2e-38	PREDICTED: dof zinc finger protein DOF1.2-like
Refseq	XP_016698133.1	2e-38	PREDICTED: dof zinc finger protein DOF1.2-like
Refseq	XP_016698134.1	2e-38	PREDICTED: dof zinc finger protein DOF1.2-like
Refseq	XP_016698136.1	2e-38	PREDICTED: dof zinc finger protein DOF1.2-like
Refseq	XP_016698137.1	2e-38	PREDICTED: dof zinc finger protein DOF1.2-like
Swissprot	Q9SVC5	1e-31	DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBL	A0A2P5AMS4	4e-45	A0A2P5AMS4_PARAD; Zinc finger, Dof-type
STRING	Gorai.009G168400.1	8e-38	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	5e-28	Dof family protein