PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26879.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 251aa    MW: 28120.2 Da    PI: 4.6047
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26879.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1995148356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+++++ +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  PK26879.1  95 KKRRLSVDQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 148
                556899***********************************************9 PP
2HD-ZIP_I/II131.72.8e-4295185292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kkrrls +qv++LE+sFe e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkq+Ekdy++L+++y++lk++ e+L+ke+++L++e++
    PK26879.1  95 KKRRLSVDQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQMEKDYDVLQASYNSLKADYESLRKETDKLKTEVQ 185
                  9**************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.09E-1982152IPR009057Homeodomain-like
PROSITE profilePS5007116.98990150IPR001356Homeobox domain
SMARTSM003893.4E-1992154IPR001356Homeobox domain
CDDcd000867.88E-1793151No hitNo description
PfamPF000466.7E-1795148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.2E-2097157IPR009057Homeodomain-like
PRINTSPR000316.1E-6121130IPR000047Helix-turn-helix motif
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PRINTSPR000316.1E-6130146IPR000047Helix-turn-helix motif
PfamPF021837.2E-16150191IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAGGRVFGGS TGSSSLSVLL QNQRGSSATE PLDSLFLSGS CNSSSSPSFL GSRSMMSFED  60
VNGTNGSNKS FYRSFGCDEI GIDDDFDEYF HQPGKKRRLS VDQVQFLEKS FEVENKLEPE  120
RKVQLAKDLG LQPRQVAIWF QNRRARWKTK QMEKDYDVLQ ASYNSLKADY ESLRKETDKL  180
KTEVQLLSDE LLKREKEKES SNSEVCDDSN KLCDQEELVE KPIIGESASE GEISKASTTV  240
VCQQLEDISS V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321530.21e-104homeobox-leucine zipper protein HAT5
SwissprotQ022835e-42HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2P5EKJ81e-125A0A2P5EKJ8_TREOI; Octamer-binding transcription factor
STRINGPOPTR_0015s07640.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-42homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]