PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26879.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 96aa    MW: 11669 Da    PI: 10.1005
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26879.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-19352756
               --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               ++ +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  PK26879.2  3 LSVDQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 52
               6789*********************************************9 PP
2HD-ZIP_I/II130.18.7e-42289592
  HD-ZIP_I/II  5 rlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                 rls +qv++LE+sFe e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkq+Ekdy++L+++y++lk++ e+L+ke+++L++e+k
    PK26879.2  2 RLSVDQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQMEKDYDVLQASYNSLKADYESLRKETDKLKTEVK 89
                 9***********************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.7E-14158IPR001356Homeobox domain
PROSITE profilePS5007117.167154IPR001356Homeobox domain
SuperFamilySSF466892.91E-19265IPR009057Homeodomain-like
CDDcd000861.93E-13255No hitNo description
Gene3DG3DSA:1.10.10.608.9E-21362IPR009057Homeodomain-like
PfamPF000465.0E-17352IPR001356Homeobox domain
PRINTSPR000311.6E-62534IPR000047Helix-turn-helix motif
PROSITE patternPS0002702952IPR017970Homeobox, conserved site
PRINTSPR000311.6E-63450IPR000047Helix-turn-helix motif
PfamPF021837.8E-155489IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
XRLSVDQVQF LEKSFEVENK LEPERKVQLA KDLGLQPRQV AIWFQNRRAR WKTKQMEKDY  60
DVLQASYNSL KADYESLRKE TDKLKTEVKF HYPFRN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14654RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112600.13e-49homeobox-leucine zipper protein HAT5
SwissprotA2YWC08e-39HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6K4981e-38HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ6Z2488e-39HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
SwissprotQ9XH371e-38HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLA0A2P5EKJ82e-51A0A2P5EKJ8_TREOI; Octamer-binding transcription factor
STRINGXP_010112600.11e-48(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-40homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]