PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK26966.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

G2-like

Protein Properties

Length: 113aa MW: 12847.6 Da PI: 11.359

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK26966.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.9	6.1e-30	1	51	5	55
G2-like 5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rWtp LH++Fv+ave+LGG e+AtPk +l+lm+vkgL+++hvkSHLQ+YR+ PK26966.1 1 RWTPGLHRAFVHAVERLGGLERATPKLVLQLMSVKGLSIAHVKSHLQMYRS 51 7*************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00249	6.6E-7	1	50	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	13.278	1	54	IPR017930	Myb domain
SuperFamily	SSF46689	1.61E-13	1	52	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-22	1	53	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	9.2E-27	1	52	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
RWTPGLHRAF VHAVERLGGL ERATPKLVLQ LMSVKGLSIA HVKSHLQMYR SKKLDESGQV 60 LSHRNMGMQR DHIIQMCQRF SPYGGKFTMD NRSYSTATSS TSTFKHPITS SRX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-19	1	53	6	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-19	1	53	6	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-19	1	53	5	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	1	53	5	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	1	53	5	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	1	53	5	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-19	1	53	6	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-19	1	53	6	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-19	1	53	6	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-19	1	53	6	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-19	1	53	6	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-19	1	53	6	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010657046.1	1e-40	PREDICTED: uncharacterized protein LOC104880828
TrEMBL	A0A2P5FFB9	1e-45	A0A2P5FFB9_TREOI; Octamer-binding transcription factor
STRING	VIT_12s0028g02080.t01	3e-42	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3012	32	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	8e-29	G2-like family protein