PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK27186.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 372aa    MW: 42447.2 Da    PI: 6.3189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK27186.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.7e-06188207120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                + Cp C+ksF+r  nL+ H+
  PK27186.1 188 FHCPLCSKSFNRYNNLQMHM 207
                78*****************9 PP
2zf-C2H213.40.00024274296123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C++C+k+F  k + ++H +++
  PK27186.1 274 FACTKCSKPFAVKGDWRTHEKNC 296
                78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.09E-7188210No hitNo description
PROSITE profilePS5015710.72188215IPR007087Zinc finger, C2H2
SMARTSM003550.067188210IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-5188207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.9E-5261294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.09E-7269294No hitNo description
SMARTSM0035591274294IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
FDFFVCVAMT NPHHFSKNTL FNNERGWINF IPIHNPNPNP NPNNNNNHYY YYSSSSSSTT  60
PSSSSSSSSS FSSSSKSPPL REALPLIDKL SPQSLLLPTN NHNHNSDDYD DEDDDDDDED  120
IEDCEKDNTS VTVALQMGLI PSPNNNDNNI SRVLDNEKED LEGSEEQGRG EEYWIPTPSQ  180
ILVGPTQFHC PLCSKSFNRY NNLQMHMWGH GSQYRKGAES LKGSNKQGGG MTRVACYCCW  240
SGCKHNISHP RARPLKDFRT LQTHYKRKHG AKPFACTKCS KPFAVKGDWR THEKNCGKIW  300
YCLCGSDFKH KRSLKDHVKA FGQGHAPLLD YNNNNNHNNN DDDHDHEDEP SAYSELIDDQ  360
QQYPDDHHHQ YY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755136e-57HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052543.21e-108PREDICTED: zinc finger protein WIP2
SwissprotQ8W0319e-98ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A2P5E7251e-112A0A2P5E725_TREOI; TFIIH C1-like domain containing protein
STRINGEOX967001e-106(Theobroma cacao)
STRINGGSMUA_AchrUn_randomP20320_0011e-107(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.13e-94WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]