PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK27196.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 104aa    MW: 12111 Da    PI: 7.0382
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK27196.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.93.7e-13695199
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
               ffk+l     +++ +++lp kf++ h +       +++  + + +W++ l     +++ +l++GW eFvk  +L  g  + F+++g+s+f  ++ +++k
  PK27196.1  6 FFKIL---TDHSLTQMRLPQKFVRLHRET--LASSVSVVLPCSHTWKLGL--VVEDDKLYLKEGWPEFVKHYQLAYGHLLDFTYVGSSNF--NIAIYDK 95
               77888...33444569********99755..44469999999********..999999****************************9999..7777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.434396IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-19498IPR015300DNA-binding pseudobarrel domain
CDDcd100172.13E-11494No hitNo description
Gene3DG3DSA:2.40.330.103.3E-17598IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.8E-10696IPR003340B3 DNA binding domain
PfamPF023627.1E-10694IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MTSFCFFKIL TDHSLTQMRL PQKFVRLHRE TLASSVSVVL PCSHTWKLGL VVEDDKLYLK  60
EGWPEFVKHY QLAYGHLLDF TYVGSSNFNI AIYDKTTCEI DYSP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5F3479e-26A0A2P5F347_TREOI; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-20B3 family protein