PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK27421.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 454aa    MW: 50798.9 Da    PI: 6.0648
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK27421.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-19206256256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  PK27421.1 206 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 256
                59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.62E-34205265No hitNo description
SMARTSM003801.9E-39206269IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23206264IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-32206264IPR001471AP2/ERF domain
PROSITE profilePS5103222.932206263IPR001471AP2/ERF domain
PfamPF008472.4E-12207256IPR001471AP2/ERF domain
PRINTSPR003679.5E-11207218IPR001471AP2/ERF domain
PRINTSPR003679.5E-11229245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MAATKNSGKS KKGVDETQMD MDLRFSLERR QWKPVLDEAS MSPRPYKKIR SPDRQHQSYF  60
SVAVDSAQPI SPGPPNPSPT SSSSSSSASR IVFPFAYDGS DSQTHINKQF TGNNYPLFPP  120
VSLPQIPQNQ MISFGSHQQN AMNYHPSFFA GTGDVQNQQQ LLQYWSDALN LSPRGRMIMM  180
MNGLGPDGRP IFRPPPPVQP INTTKLYRGV RQRHWGKWVA EIRLPRNRTR LWLGTFDTAE  240
DAALAYDREA FKLRGENARL NFPDLFLNKN NNNSDSSAGP SSASSCPNNK AHESSKRTIH  300
RNQTQAQEEL NIEASDSERM PPPARDDNPD EESGLGSTAN DEVKGFSAGE GSVVSQSQSQ  360
ELVWGDMAED WLNAIPAGWG PGSPAWDDLD SNNNLLLQSH DLQFTNPNQQ HELNQQAPQD  420
IQNQRYCFEK FGSSSTSSSS YPMKPFFWKD QDDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-21205263160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972100.11e-145PREDICTED: ethylene-responsive transcription factor ERF053
TrEMBLA0A2P5EQL40.0A0A2P5EQL4_TREOI; AP2/ERF transcription factor
STRINGEOX993821e-145(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-45ERF family protein