PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK27567.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 763aa MW: 88771 Da PI: 7.6395

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK27567.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69	1.1e-21	44	131	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fY+ YAk++GF +rk+ ++s +g i++r++vC eg+++ + +t +++r++ +trtgC+a l++ +++ +++w+ +++++ HnHela PK27567.1 44 FYEMYAKRMGFGTRKDDVRRS--HGVIVMRRWVCCSEGSKKIASPDTPRKKRPHDVTRTGCQAALRILLTQpSNTWKCKEFSTMHNHELA 131 9****************99..999**************999********************9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-18	44	131	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.7E-30	253	347	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.2	532	568	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.7E-5	544	565	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence Send to blast
MNDEHTYEWE TITAELNIIK PVNEIEIQDV LGKSLDKLEK WEAFYEMYAK RMGFGTRKDD 60 VRRSHGVIVM RRWVCCSEGS KKIASPDTPR KKRPHDVTRT GCQAALRILL TQPSNTWKCK 120 EFSTMHNHEL ASSSEVQFLR SYRVVSNGLL AQVRSMNSVG IKTANIMSHV ALQSGGYEKM 180 PCQLRDVYNR VAGAKREEKI ETDSEGALGF LDCLAEKDPN FFVVYQVDDE NRLANLFWAD 240 GNSRVDYVAF GDVLGFDTTY MTNEYNKPLP VLIGVNHHFN TCIFGFALLL HEKLPSYSWL 300 LQKFLECHGD KKPSVVVTDQ DAAMKQAIVE HMPDVTHRLC AWHLNTNASK KVKDPIFLKT 360 FKDLMYNYYE EEEFEARWLD VIQTQQLTDN EWCQTTFESR QQWAETYLRG SFVAGMRTTQ 420 RCESINSALK KFLEKNYCLR EFVTTIDMTV SKLRHNETAN DFKSRCTRPH PPNPTCLTTY 480 YNQCAEFYTR TMYHKVAEQL DLENNYFVLT QEQEGEWQIF TIGKFQHPDV QYRVHYCEGR 540 RALHCSCLLY ESQGYPCRHL WATMKRLNMR RIPNSLLMKR WSKSAKINLH LHFNPPAQPQ 600 QHIYEMARFG SLSSLTYNFT FYAVKSEDSY NRAKEELERL TLMFKEEFDL NSNAEGETPQ 660 PGRYRSNPNI IKDPEVVRTK GTGNTREGPN GEQIPRNSRH CRICRSSDHD YRRCPNRQHN 720 TGSQGQQPPN NQPASDSFND HSNAYFPEPP SSTQESYYGH SYN

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence Send to blast

MNDEHTYEWE TITAELNIIK PVNEIEIQDV LGKSLDKLEK WEAFYEMYAK RMGFGTRKDD  60
VRRSHGVIVM RRWVCCSEGS KKIASPDTPR KKRPHDVTRT GCQAALRILL TQPSNTWKCK  120
EFSTMHNHEL ASSSEVQFLR SYRVVSNGLL AQVRSMNSVG IKTANIMSHV ALQSGGYEKM  180
PCQLRDVYNR VAGAKREEKI ETDSEGALGF LDCLAEKDPN FFVVYQVDDE NRLANLFWAD  240
GNSRVDYVAF GDVLGFDTTY MTNEYNKPLP VLIGVNHHFN TCIFGFALLL HEKLPSYSWL  300
LQKFLECHGD KKPSVVVTDQ DAAMKQAIVE HMPDVTHRLC AWHLNTNASK KVKDPIFLKT  360
FKDLMYNYYE EEEFEARWLD VIQTQQLTDN EWCQTTFESR QQWAETYLRG SFVAGMRTTQ  420
RCESINSALK KFLEKNYCLR EFVTTIDMTV SKLRHNETAN DFKSRCTRPH PPNPTCLTTY  480
YNQCAEFYTR TMYHKVAEQL DLENNYFVLT QEQEGEWQIF TIGKFQHPDV QYRVHYCEGR  540
RALHCSCLLY ESQGYPCRHL WATMKRLNMR RIPNSLLMKR WSKSAKINLH LHFNPPAQPQ  600
QHIYEMARFG SLSSLTYNFT FYAVKSEDSY NRAKEELERL TLMFKEEFDL NSNAEGETPQ  660
PGRYRSNPNI IKDPEVVRTK GTGNTREGPN GEQIPRNSRH CRICRSSDHD YRRCPNRQHN  720
TGSQGQQPPN NQPASDSFND HSNAYFPEPP SSTQESYYGH SYN

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-89	FAR1-related sequence 5