PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK27657.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 849aa MW: 97727 Da PI: 6.6465

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK27657.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.9	1.7e-23	176	262	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA GFs+rk+ +ks+ +g +++r+++C+++g+r + ++ ++r++r+etrtgC a++++ +++++k++vt++e++HnHe++ PK27657.1 176 CYSRYAVLEGFSIRKDFVNKSRIDGAVVSRRYTCYRQGYRPVRPNS--NARKPRQETRTGCLAHMTIARQTNDKFRVTHFETKHNHEFV 262 7***************************************9988..9************************************86 PP
2	FAR1	93.2	3.3e-29	310	398	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA +vGFsvrk++ ++sk +g + +r+f+C +eg+r+++k++ + +r+r+etr+gC a+l++++++dgk+++t++e++HnHel+ PK27657.1 310 EFYNTYAGRVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQRDKRD-MNVKRPRKETRIGCSAQLVISRQSDGKYRITHFEEKHNHELV 398 6*****************************************999.99************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.3E-22	176	262	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50811	8.685	198	262	IPR003657	WRKY domain
Pfam	PF03101	2.3E-26	310	398	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-27	514	608	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.718	794	830	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0047	805	832	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 849 aa Download sequence Send to blast
XINAELVTGE PNEADRKALI STILPIALSH YTADQPFTKI EKIRSMDSNE ENKERCQSPR 60 GSSSDMSQVV IDGFCGQSEG GESLKNVVKN GVVNDGEHDE NQSPNVSSVD IDGEECQTPK 120 LSSVNECEMD VDYSRFESSS VDLSESGSGV KDEEEDLYLV PDVGIEFESE DHAYKCYSRY 180 AVLEGFSIRK DFVNKSRIDG AVVSRRYTCY RQGYRPVRPN SNARKPRQET RTGCLAHMTI 240 ARQTNDKFRV THFETKHNHE FVNSSTTHML PSQKRLTFAQ AVEDELSNHC VIDGVPKLGM 300 GFNSEDQAYE FYNTYAGRVG FSVRKDYVNR SKIDGAVASR RFTCFREGFR QRDKRDMNVK 360 RPRKETRIGC SAQLVISRQS DGKYRITHFE EKHNHELVAP CRIHMLRSQK RLVVTQVEEG 420 SLVDSSNGQP LAIPASDLLC KTVRDIDYKG KLPSKCTREI REGEGVKMQQ YFIGKHSKNP 480 SFFYAMQPDA DGQITNVFWA DAKMVMDYGD FGDVVCFDTS YKLHKDCRPF APFIGINHHK 540 QVVIFGAALL YDETLESYKW LFRTFLEAMS GKKPKTILTD QDVVMAEAIN TVLVGAHHRS 600 CLWHLYQNGV KQLGYMFAGS SSFINDLSRC FFDQEEEEDF INAWKAMLDL YGLWENDWLH 660 QIYENREKWA IPYRRHIFSA DMERSLRFET FTTSLRKYLN PDSDVIPLLK HLAKLVNDFH 720 YKELEANYDM SQHPPKLMGD VIFLKHARDF YTPSVFELFQ HEYETCLNMV ANQCTNSEAL 780 FQYRVSLYGQ HREYTVTFDS ADETICCNCM KFECVGVLCS HAMKVLDYRN IKLLPTKYIL 840 KRWTKDARV

Sequence ? help Back to Top

Protein Sequence Length: 849 aa Download sequence Send to blast

XINAELVTGE PNEADRKALI STILPIALSH YTADQPFTKI EKIRSMDSNE ENKERCQSPR  60
GSSSDMSQVV IDGFCGQSEG GESLKNVVKN GVVNDGEHDE NQSPNVSSVD IDGEECQTPK  120
LSSVNECEMD VDYSRFESSS VDLSESGSGV KDEEEDLYLV PDVGIEFESE DHAYKCYSRY  180
AVLEGFSIRK DFVNKSRIDG AVVSRRYTCY RQGYRPVRPN SNARKPRQET RTGCLAHMTI  240
ARQTNDKFRV THFETKHNHE FVNSSTTHML PSQKRLTFAQ AVEDELSNHC VIDGVPKLGM  300
GFNSEDQAYE FYNTYAGRVG FSVRKDYVNR SKIDGAVASR RFTCFREGFR QRDKRDMNVK  360
RPRKETRIGC SAQLVISRQS DGKYRITHFE EKHNHELVAP CRIHMLRSQK RLVVTQVEEG  420
SLVDSSNGQP LAIPASDLLC KTVRDIDYKG KLPSKCTREI REGEGVKMQQ YFIGKHSKNP  480
SFFYAMQPDA DGQITNVFWA DAKMVMDYGD FGDVVCFDTS YKLHKDCRPF APFIGINHHK  540
QVVIFGAALL YDETLESYKW LFRTFLEAMS GKKPKTILTD QDVVMAEAIN TVLVGAHHRS  600
CLWHLYQNGV KQLGYMFAGS SSFINDLSRC FFDQEEEEDF INAWKAMLDL YGLWENDWLH  660
QIYENREKWA IPYRRHIFSA DMERSLRFET FTTSLRKYLN PDSDVIPLLK HLAKLVNDFH  720
YKELEANYDM SQHPPKLMGD VIFLKHARDF YTPSVFELFQ HEYETCLNMV ANQCTNSEAL  780
FQYRVSLYGQ HREYTVTFDS ADETICCNCM KFECVGVLCS HAMKVLDYRN IKLLPTKYIL  840
KRWTKDARV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024031341.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2I4E4L0	0.0	A0A2I4E4L0_JUGRE; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008230452.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-120	FAR1-related sequence 5