PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK27921.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 235aa    MW: 26243.2 Da    PI: 9.3368
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK27921.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444.1e-1490141155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+++P++   + ++ + a+i+  A++++k+L+
  PK27921.1  90 QRMTHIAVERNRRKQMNDYLAVLRSMMPSS---YVQRGDQASIVGGAINFVKELE 141
                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-1788160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.14E-1488145No hitNo description
Gene3DG3DSA:4.10.280.101.6E-1388144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.05989140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-1190141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-995146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
XITSPSSMEL HNNNNNNNNH YSTNKFSSTD SAADYFTGNY TSSTTTLDGG RPPSSHVFSP  60
AAETTQATTT VRRKRRRIRS VKNKEEVENQ RMTHIAVERN RRKQMNDYLA VLRSMMPSSY  120
VQRGDQASIV GGAINFVKEL EQLLQFLEAQ KRSSTSSTTT TKKESSPSDS SDSDHSSNNN  180
SDLFSDFFIF PQYSTCSSSS NNNNNNNKVN INDHHQTKST AEKRSAVADV EVTMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17276RKRRR
27377KRRRI
390101RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272971.11e-60PREDICTED: transcription factor bHLH96
SwissprotQ9C7T43e-40BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1U8B9D63e-59A0A1U8B9D6_NELNU; transcription factor bHLH96
STRINGXP_010272971.14e-60(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.14e-32bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]