PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK27925.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 310aa MW: 36001.4 Da PI: 9.1091

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK27925.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.7	2e-48	40	171	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrF Pt+eelv++yL++k+++k+ e+++vik +diy++ePwdLpk +++++++w+fF++r++++a+g r+nr+t+sgyWkatg+ v+s++ PK27925.1 40 LPPGFRFYPTEEELVSFYLRNKLDSKREEVNRVIKVIDIYSIEPWDLPKhsgeLCQGDTEQWFFFTPRQEREARGGRPNRTTASGYWKATGSPSYVYSSD 139 79**************************999***********646654455777************************************ PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g+kkt+vfykg+ap+g+kt+W m+eyr+ PK27925.1 140 NRVIGVKKTMVFYKGKAPTGRKTKWKMNEYRA 171 ****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.8E-50	31	178	IPR003441	NAC domain
PROSITE profile	PS51005	48.962	40	229	IPR003441	NAC domain
Pfam	PF02365	4.5E-25	41	170	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
XQRRPSYGGK QELDTTTLKK LNNNTLKLPI QMTPMHEQEL PPGFRFYPTE EELVSFYLRN 60 KLDSKREEVN RVIKVIDIYS IEPWDLPKHS GELCQGDTEQ WFFFTPRQER EARGGRPNRT 120 TASGYWKATG SPSYVYSSDN RVIGVKKTMV FYKGKAPTGR KTKWKMNEYR AIEEVNSSNN 180 ITTPTVMYSY ITILTMKHLP YLIVADHLYH VILSFQLRHE FSLCRVYIIS GSFRAFDRRP 240 TELTRVIREQ QRDEAGPSNQ NAAMIERAQS SSATSSSGEL VDNPMAGGSS TDWEMNQQPL 300 WDLWEQFNWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-35	28	173	4	144	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-35	28	173	4	144	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-35	28	173	4	144	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-35	28	173	4	144	NO APICAL MERISTEM PROTEIN
3swm_A	2e-35	28	173	7	147	NAC domain-containing protein 19
3swm_B	2e-35	28	173	7	147	NAC domain-containing protein 19
3swm_C	2e-35	28	173	7	147	NAC domain-containing protein 19
3swm_D	2e-35	28	173	7	147	NAC domain-containing protein 19
3swp_A	2e-35	28	173	7	147	NAC domain-containing protein 19
3swp_B	2e-35	28	173	7	147	NAC domain-containing protein 19
3swp_C	2e-35	28	173	7	147	NAC domain-containing protein 19
3swp_D	2e-35	28	173	7	147	NAC domain-containing protein 19
3ulx_A	2e-35	37	170	12	139	Stress-induced transcription factor NAC1
4dul_A	2e-35	28	173	4	144	NAC domain-containing protein 19
4dul_B	2e-35	28	173	4	144	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015872891.1	1e-122	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	6e-82	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2P5CWM2	1e-137	A0A2P5CWM2_PARAD; NAC domain containing protein
STRING	XP_010102010.1	1e-121	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-82	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]