PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK27980.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 261aa    MW: 29416.1 Da    PI: 4.7334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK27980.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.7e-10188230754
                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                + ErrRR r+++++  Lr+l+P       +K++Ka+i+  Av Y+++L
  PK27980.1 188 ISERRRRGRMKEKLYALRSLVPFI-----TKMDKASIVGDAVVYLRDL 230
                67*********************7.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.831181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-15183247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.09E-12183233No hitNo description
Gene3DG3DSA:4.10.280.102.5E-14183246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7188230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MLSNSPSPNL VIPNFHSGLE LHDFFDGTHN IISEDQFVNL LIRGAETDQY PFVNFDHCDL  60
INSFVNDHHD DPIMVPQDHV FDFNKGISTV TKGPIINDNP NKITQFMNSS LAMPTFDRHP  120
QEVKSGDGDE NRGNHYECNN DKEDEEEEDD DEEENDRQES SETNTGSTSA NSAKKTNVKA  180
GDKSKTLISE RRRRGRMKEK LYALRSLVPF ITKMDKASIV GDAVVYLRDL KKQANNLKDE  240
IASLETSSLG SXSNIPTKNI H
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5FTM65e-68A0A2P5FTM6_TREOI; Basic helix-loop-helix transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36793358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-29FER-like regulator of iron uptake