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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PK28293.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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| Family |
BBR-BPC |
| Protein Properties |
Length: 284aa MW: 31493 Da PI: 10.1517 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PK28293.1 | genome | CCBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 337.3 | 4e-103 | 1 | 284 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssia.erdaki....rernlalsekkaav...aerd.........maflqrdkalaernkalverdnklla 83
mddd+ rn+gyye + +k +lglqlmss++ +rd+k+ r+ + + ++++++ ++rd m++ rd+++++ ++k+l+
PK28293.1 1 MDDDSL--RNWGYYEAS--FKGHLGLQLMSSMSdQRDTKPflpgRDPTTVMVNSNGTFhtnHPRDcvvsdapvpMNY-GRDSWVNH--------RDKFLN 87
888866..9*****988..*************9789********9999989999988844456669***********.99****99........789*** PP
GAGA_bind 84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
+l+ +++ ++vl++t+ ++s+q+ l+++ + ++ e + iee + ++ke+ +kkrq++ pk++k kk++k +k++++++
PK28293.1 88 MLPPNTN--------YGVLPETSGAHSMQM-----LQPPEAA-PRDERAVVGRIEE-PVVNKESGPSKKRQSGGAPKTPKVKKPRK----PKENNNAAL- 167
***8886........9**************.....5554444.5556666777766.667788889999*************9999....333444444. PP
GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpv 283
r+k kks+d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++SvyPLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++np+
PK28293.1 168 -VRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSVYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPI 266
.579************************************************************************************************ PP
GAGA_bind 284 DLkdhWAkHGtnkfvtir 301
DL+++WA+HGtnkfvtir
PK28293.1 267 DLRSYWARHGTNKFVTIR 284
*****************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MDDDSLRNWG YYEASFKGHL GLQLMSSMSD QRDTKPFLPG RDPTTVMVNS NGTFHTNHPR 60
DCVVSDAPVP MNYGRDSWVN HRDKFLNMLP PNTNYGVLPE TSGAHSMQML QPPEAAPRDE 120
RAVVGRIEEP VVNKESGPSK KRQSGGAPKT PKVKKPRKPK ENNNAALVRV KPAKKSMDVV 180
INGIDMDISG IPIPVCSCTG TPQQCYRWGC GGWQSACCTT NVSVYPLPMS TKRRGARIAG 240
RKMSQGAFKK VLEKLAAEGY NFANPIDLRS YWARHGTNKF VTIR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
