PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK28420.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C3H

Protein Properties

Length: 755aa MW: 82844.4 Da PI: 6.7389

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK28420.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.9	7.2e-08	225	245	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+f+a+ G+C G++C+F H+ PK28420.1 225 ICDFYAK-GWCIKGSSCRFLHV 245 8****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	3.4E-6	220	244	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.028	220	247	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0013	220	246	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-5	225	245	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010220	Biological Process	positive regulation of vernalization response
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence Send to blast
KKKNCLTTPK PKTTGVSPQG TELHPVAIEV TDSHLAETTP NPLPNRTCCA MPQSPPAEVS 60 DSSIDDDDQV EEVGDDDDEK QQVQEKSDDD MSVSTPEAND DDHQKDDFAV NKTDGETLSA 120 KSPKKYHKEQ TLDVNPDLRV SDITNAKRSN SSFAEGKDMG AVLLMNNCVR QKDVLYTQYE 180 IKQTALQSCN DEKRKLSRLV ASGKETGSHS PGVEIMDQNK RPAVICDFYA KGWCIKGSSC 240 RFLHVKDRLN NDLLQSEVDG VADNKVEVQL EGLRETTQKS RSPSFPEALA PSVGNKSDSI 300 KSLEHLERKA SHNILEMPKF VSFQREVFPL SFKDVGRENK SQIKSVNDYS GRSTLTNRDG 360 PVLNKSLHPE YGVSSSGNII SSTNYHFINP PSHSRSMEEP TSIQSQPTLN NQTLTSQSPN 420 SSSGNSLLTT GMLSSSRISA WTESSLPLSY SSVKPSPLGL RSSFLQSSSH YGSEPDNLPS 480 TNRISYSNDW EPSVPFQPSF LVRSMMSSTG SQYDPLRDVV ELSKSGDVSL RASYYSQGSS 540 IVNILHPQNH GDVVPDAPDL ACNDDMKSVS SHNTYHGKVL GKNCQTQGKD MIELEVVGTS 600 TGWEKGSVAK QKNSSGSFDV KDITEATSDG RHRSQKHGLC GSLHVKADRV GQKIETVAGH 660 IVEGVVVRKE SKAQLQFRSA LIDFVKELLK PKWCEGALSK EAHKKIVKKS VEKVLSTLQP 720 AQIPPSVELV KQYLASFHAK IEKLVEGYAG IYGKV

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence Send to blast

KKKNCLTTPK PKTTGVSPQG TELHPVAIEV TDSHLAETTP NPLPNRTCCA MPQSPPAEVS  60
DSSIDDDDQV EEVGDDDDEK QQVQEKSDDD MSVSTPEAND DDHQKDDFAV NKTDGETLSA  120
KSPKKYHKEQ TLDVNPDLRV SDITNAKRSN SSFAEGKDMG AVLLMNNCVR QKDVLYTQYE  180
IKQTALQSCN DEKRKLSRLV ASGKETGSHS PGVEIMDQNK RPAVICDFYA KGWCIKGSSC  240
RFLHVKDRLN NDLLQSEVDG VADNKVEVQL EGLRETTQKS RSPSFPEALA PSVGNKSDSI  300
KSLEHLERKA SHNILEMPKF VSFQREVFPL SFKDVGRENK SQIKSVNDYS GRSTLTNRDG  360
PVLNKSLHPE YGVSSSGNII SSTNYHFINP PSHSRSMEEP TSIQSQPTLN NQTLTSQSPN  420
SSSGNSLLTT GMLSSSRISA WTESSLPLSY SSVKPSPLGL RSSFLQSSSH YGSEPDNLPS  480
TNRISYSNDW EPSVPFQPSF LVRSMMSSTG SQYDPLRDVV ELSKSGDVSL RASYYSQGSS  540
IVNILHPQNH GDVVPDAPDL ACNDDMKSVS SHNTYHGKVL GKNCQTQGKD MIELEVVGTS  600
TGWEKGSVAK QKNSSGSFDV KDITEATSDG RHRSQKHGLC GSLHVKADRV GQKIETVAGH  660
IVEGVVVRKE SKAQLQFRSA LIDFVKELLK PKWCEGALSK EAHKKIVKKS VEKVLSTLQP  720
AQIPPSVELV KQYLASFHAK IEKLVEGYAG IYGKV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024031052.1	0.0	protein FRIGIDA-ESSENTIAL 1
TrEMBL	A0A2P5CK08	0.0	A0A2P5CK08_TREOI; Zinc finger, CCCH-type
STRING	XP_010111195.1	1e-175	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10805	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-28	C3H family protein