PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK28565.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

MYB

Protein Properties

Length: 220aa MW: 23739.2 Da PI: 9.6191

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK28565.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.2	2.2e-19	13	58	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l ++v+++G+++W++I++ ++ gR++k+c++rw + PK28565.1 13 KGPWSPEEDDSLQKLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58 79****************************.*********985 PP
2	Myb_DNA-binding	55.3	1.5e-17	67	109	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ PK28565.1 67 AFTAEEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 109 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.318	8	63	IPR017930	Myb domain
SuperFamily	SSF46689	4.21E-32	10	106	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-16	12	61	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-19	13	58	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-26	14	66	IPR009057	Homeodomain-like
CDD	cd00167	6.04E-16	15	57	No hit	No description
SMART	SM00717	1.6E-14	64	112	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.54	65	114	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-23	67	113	IPR009057	Homeodomain-like
CDD	cd00167	8.26E-12	67	110	No hit	No description
Pfam	PF00249	3.7E-15	67	109	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009723	Biological Process	response to ethylene
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0010200	Biological Process	response to chitin
GO:0046686	Biological Process	response to cadmium ion
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MATITRKEMD RIKGPWSPEE DDSLQKLVEK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS 60 PQVEHRAFTA EEDDTIIRAH ARFGNKWATI ARLLNGRTDN AIKNHWNSTL KRKCSTMLEE 120 TDNGHGHVSG GGGGGGRAGG YDCNYPQPLK RSVSAGSGIP VSTGLYMNHP GSPSGSDVSD 180 SSVPTVGCTT LSPSHVFRPV PRTGGVLVET ASSSNNNNNX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	3e-41	12	114	3	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-41	12	114	3	105	C-Myb DNA-Binding Domain
1msf_C	2e-41	12	114	3	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269\|PubMed:23809151, ECO:0000269\|PubMed:24894996}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00632	PBM	25215497	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress. {ECO:0000269\|PubMed:23809151}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019444671.1	1e-106	PREDICTED: transcription factor MYB44-like
Swissprot	O23160	5e-88	MYB73_ARATH; Transcription factor MYB73
TrEMBL	A0A2P2LVZ8	1e-106	A0A2P2LVZ8_RHIMU; Auxin response factor
STRING	POPTR_0005s18620.1	1e-104	(Populus trichocarpa)
STRING	cassava4.1_011111m	1e-104	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF843	34	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	7e-81	myb domain protein 73

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]