PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK28683.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 153aa    MW: 17956.4 Da    PI: 11.3135
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK28683.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.6e-15118153140
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtae 40 
                ++++GVr+++ +grW+AeIrdp+    r kr++lg+f+tae
  PK28683.1 118 KKFRGVRRRP-WGRWAAEIRDPT----RrKRVWLGTFDTAE 153
                59********.**********84....34**********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.9E-4112153IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.31E-18118153No hitNo description
PROSITE profilePS5103217.925119153IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-12119153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.1E-18119153IPR001471AP2/ERF domain
SMARTSM003804.7E-7119153IPR001471AP2/ERF domain
PfamPF008471.3E-9119153IPR001471AP2/ERF domain
PRINTSPR003673.9E-9120131IPR001471AP2/ERF domain
PRINTSPR003673.9E-9142153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MRVDHRYNKS FLDPSVKFSE HKITTRKLFQ QDPKPEPDMN PKPEKIVRII ITDADATDSS  60
SDEDESVSVQ RRVKRHVREI SLQQRPPLSP SAKSLITKQE RVSKRPIGSP ESDSVRRKKF  120
RGVRRRPWGR WAAEIRDPTR RKRVWLGTFD TAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115125RRKKFRGVRRR
2123142RRRPWGRWAAEIRDPTRRKR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874690.17e-42pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046822e-29PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A2P5BPN92e-54A0A2P5BPN9_TREOI; AP2/ERF transcription factor
STRINGXP_008240070.14e-40(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.26e-14cytokinin response factor 2