PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK28804.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 116aa    MW: 13222.7 Da    PI: 7.148
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK28804.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.62.8e-154267126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               +ktelC+ +++tG C+yG+ C+FaHg
  PK28804.1 42 FKTELCNKWQQTGACPYGEHCQFAHG 67
               79***********************9 PP
2zf-CCCH22.32.3e-0780105126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ykte+Cr  +++  C+yG rC+F H+
  PK28804.1  80 YKTEICRMVLAGDPCPYGHRCHFRHS 105
                9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-193674IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-123873IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.224169IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-94168IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-124267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-1375108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-975110IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-479106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.37579107IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-480105IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
XQRVYVPGVN GTNGSSSSGG IQKEEQENLS GLEMEVYNQG MFKTELCNKW QQTGACPYGE  60
HCQFAHGLDE LRPVIRHPRY KTEICRMVLA GDPCPYGHRC HFRHSLTEQE KLMLPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-2242108470Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108899.27e-58zinc finger CCCH domain-containing protein 14
SwissprotQ6L5G19e-52C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLW9S1012e-56W9S101_9ROSA; Zinc finger CCCH domain-containing protein 14
STRINGXP_010108899.13e-57(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.21e-51C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]