PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK28823.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 396aa    MW: 44072.4 Da    PI: 4.3044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK28823.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.4e-19117167155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  PK28823.1 117 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 167
                59********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.38E-33117174No hitNo description
SMARTSM003802.8E-38118181IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-21118175IPR016177DNA-binding domain
PROSITE profilePS5103223.63118175IPR001471AP2/ERF domain
PfamPF008471.0E-12118167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-29118175IPR001471AP2/ERF domain
PRINTSPR003674.7E-10119130IPR001471AP2/ERF domain
PRINTSPR003674.7E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEQSILCPIK CTEHRSITKK LTRPSKKSSS DSSFAVPRTV RISITDPDAT DSSSDEEGEF  60
FSRQRVKRYV HEVNIETSCK PNLVSNVRKR PAVEAGPTCR RPIKTSNTSS SSSSPVKKFR  120
GVRQRPWGKW AAEIRDPARR VRLWLGTYDT AEEAAMVYDN AAIKLRGPDA LTNFVTPSAK  180
ENPAEPEITG RASASVSGYE SSEESRNLSS PTSVLHFRTH SNEEEGGQKP ILDDFILEPE  240
VLSQPLKQEP EEPEEEEAVI QECQGETTTN GVANDLGDYL SFDLPPFEDE FFNFEYSPES  300
TTLFDPSFFL LDDIKIENDN NEVSASDDMI IQPLPDYIIK EDFSDMFIES PYDTSSGTDS  360
LCQGGDDLFR DILFGSDPLV VSEKFTVAAT VIGPSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21117174159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097869.21e-138ethylene-responsive transcription factor CRF4
TrEMBLA0A2P5BMQ31e-164A0A2P5BMQ3_PARAD; AP2/ERF transcription factor
STRINGXP_010097869.11e-138(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-55cytokinin response factor 4