PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK29011.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NF-YB
Protein Properties Length: 148aa    MW: 16660.5 Da    PI: 4.8812
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK29011.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB49.79.2e-168105597
      NF-YB   5 drflPianvsrimkkvlPana.....kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                 ++lP a v r++k  l   a      + kda     e +  fi ++++ a+d c++ kr+ti+gdd+l al ++ f ++++pl+  l ++r+ ++ek
  PK29011.1   8 TEELPKAIVRRVVKDKLSHCAddtdfNVHKDALLAFSESARIFIHYLSATANDICKESKRQTISGDDVLKALEEIEFSEFLDPLNSSLIEFRKKNAEK 105
                5789***********998765333336999**************************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.0E-337142IPR009072Histone-fold
PfamPF008087.2E-111079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.77E-2511121IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MEKAVAETEE LPKAIVRRVV KDKLSHCADD TDFNVHKDAL LAFSESARIF IHYLSATAND  60
ICKESKRQTI SGDDVLKALE EIEFSEFLDP LNSSLIEFRK KNAEKKKGTS QTKDVKKKRK  120
LEEPLSDKNE GSESKQDEND EENGTGGD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104119KKKGTSQTKDVKKKRK
2115120KKKRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089818.11e-71DNA polymerase epsilon subunit 3
TrEMBLA0A2P5BHB92e-84A0A2P5BHB9_TREOI; Transcription initiation factor
STRINGXP_010089818.14e-71(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.15e-44nuclear factor Y, subunit B11