PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK29014.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 231aa MW: 26960.5 Da PI: 9.5036

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK29014.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.3	8.3e-42	5	137	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkklelee....vikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrF Pt+eel+++yL++k+eg++ +l++ vi+ + iy+++PwdLp+ +++++ ++++fF+ r++++a+g r++r t+sgyWkatg+ v+s PK29014.1 5 PGFRFYPTEEELISFYLHNKLEGEREDLNRvinrVIPLLPIYEFNPWDLPRysgvACQGDPEQCFFFIARQESEARGGRPSRLTESGYWKATGSPSYVYS 104 9**********************555542222567778******54665555577799******************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyr 127 ++++ +glk+t+vfy+grap+g+kt+W m+ey+ PK29014.1 105 SRNRIIGLKRTMVFYNGRAPHGTKTQWKMNEYK 137 ******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	44.389	3	169	IPR003441	NAC domain
Pfam	PF02365	2.4E-21	5	137	IPR003441	NAC domain
SuperFamily	SSF101941	4.71E-44	5	169	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
KSRIPGFRFY PTEEELISFY LHNKLEGERE DLNRVINRVI PLLPIYEFNP WDLPRYSGVA 60 CQGDPEQCFF FIARQESEAR GGRPSRLTES GYWKATGSPS YVYSSRNRII GLKRTMVFYN 120 GRAPHGTKTQ WKMNEYKAIQ GEPTTTPSAT ISHLPLLRQE FSLCRVYKKT KCLRAFDRRP 180 TREEIITINP TTTTTTLDHH HHQHQPSSLP PQWWPAFSKC GERVLEHSNF D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-30	5	169	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-30	5	169	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-30	5	169	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-30	5	169	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	5e-30	5	169	22	168	NAC domain-containing protein 19
3swm_B	5e-30	5	169	22	168	NAC domain-containing protein 19
3swm_C	5e-30	5	169	22	168	NAC domain-containing protein 19
3swm_D	5e-30	5	169	22	168	NAC domain-containing protein 19
3swp_A	5e-30	5	169	22	168	NAC domain-containing protein 19
3swp_B	5e-30	5	169	22	168	NAC domain-containing protein 19
3swp_C	5e-30	5	169	22	168	NAC domain-containing protein 19
3swp_D	5e-30	5	169	22	168	NAC domain-containing protein 19
4dul_A	4e-30	5	169	19	165	NAC domain-containing protein 19
4dul_B	4e-30	5	169	19	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023884559.1	1e-98	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-69	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2P5DXN8	1e-118	A0A2P5DXN8_PARAD; NAC domain containing protein
TrEMBL	A0A2P5EBH1	1e-118	A0A2P5EBH1_TREOI; NAC domain containing protein
STRING	XP_008243510.1	1e-95	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-72	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]