PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK29171.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 190aa    MW: 21733.9 Da    PI: 10.3876
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK29171.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.7e-114401248
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++  ++ +G g+W+++++  g+ R++k+c++rw +yl
        PK29171.1  4 FLTHITTHGHGNWSSVPKLAGLQRCGKSCRLRWINYL 40
                     778899*****************************97 PP
2Myb_DNA-binding57.82.6e-184689146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g++T+eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
        PK29171.1 46 KGSFTQEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 89
                     799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.011140IPR017930Myb domain
CDDcd001676.17E-6340No hitNo description
SMARTSM007174.3342IPR001005SANT/Myb domain
SuperFamilySSF466891.59E-23487IPR009057Homeodomain-like
PfamPF002491.6E-8540IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-17647IPR009057Homeodomain-like
PROSITE profilePS5129427.384195IPR017930Myb domain
SMARTSM007171.3E-164593IPR001005SANT/Myb domain
PfamPF002491.4E-164689IPR001005SANT/Myb domain
CDDcd001671.47E-134888No hitNo description
Gene3DG3DSA:1.10.10.608.5E-274895IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
XPIFLTHITT HGHGNWSSVP KLAGLQRCGK SCRLRWINYL RPDLRKGSFT QEEEQIIIDV  60
HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL DPQTHNLMTS SSHHQNKSQN  120
NKNFSSSFVV ISQNNNNVTK PIPKQTHIFT VSNNSSLHDH DNEITTQNNC NNMLTIPSNN  180
NTTPIFTTFX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2789522108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092474.13e-72myb-related protein 308
SwissprotQ8LPH66e-55MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A2P5CMP11e-77A0A2P5CMP1_TREOI; MYB transcription factor
STRINGXP_010092474.11e-71(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.17e-69myb domain protein 67