PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK29658.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family TCP
Protein Properties Length: 155aa    MW: 17616.5 Da    PI: 10.0308
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK29658.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.23.8e-3135114375
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasecea 75 
                 +k rh k++T++g+RdRRvRlsa +a++f+d+qd+LG+d++sk+++WL+++ak+ai  l ++              +       ++
  PK29658.1  35 ERKERHNKVSTSRGPRDRRVRLSAYTAIQFYDVQDRLGYDRPSKAVDWLIEKAKAAIASLEDLpgqnyeladfsnsvT-------QT 114
                589**********************************************************99555444433222221.......11 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.0163694IPR017887Transcription factor TCP subgroup
PfamPF036346.1E-2936120IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
XKKGGKKKVG ETKRRRENSR VSLQGHGGHV SRPIERKERH NKVSTSRGPR DRRVRLSAYT  60
AIQFYDVQDR LGYDRPSKAV DWLIEKAKAA IASLEDLPGQ NYELADFSNS VTQTEQGVCQ  120
EKINQLQHYQ GCNIEAQQPL NEITMNNEII FSMAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-184194154Putative transcription factor PCF6
5zkt_B3e-184194154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108419.13e-46transcription factor TCP4
RefseqXP_024029269.13e-46transcription factor TCP4
TrEMBLA0A2P5FMV33e-55A0A2P5FMV3_TREOI; TCP transcription factor
STRINGXP_010108419.11e-45(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148631014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.19e-35TCP domain protein 10