PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK29806.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 158aa    MW: 17813.4 Da    PI: 8.4509
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK29806.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.3e-311573259
               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
               +D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers +dp+++++tY++eH h 
  PK29806.1 15 SDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSPSDPDIFIVTYTSEHSHA 73
               79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31375IPR003657WRKY domain
PROSITE profilePS5081132.214975IPR003657WRKY domain
SuperFamilySSF1182903.27E-271075IPR003657WRKY domain
SMARTSM007749.3E-361474IPR003657WRKY domain
PfamPF031063.3E-261672IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
XKRVVKEVRE DGLYSDKWAW RKYGQKPIKG SPYPRSYYRC SSSKGCLARK QVERSPSDPD  60
IFIVTYTSEH SHAHPTRRNS LAGSTRTKFP PGTANTNTVL SNSINNNVVI NNNRDLENNK  120
SLNLDCNGNS NSNGNGYLFP SLEDLEKGLL EEIDDEVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-1816761880Disease resistance protein RRS1
5w3x_D2e-1816761880Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112624.14e-52WRKY transcription factor 22
SwissprotQ9SUS17e-45WRK29_ARATH; Probable WRKY transcription factor 29
TrEMBLA0A2P5ATS63e-65A0A2P5ATS6_PARAD; WRKY domain containing protein
STRINGXP_010112624.12e-51(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.12e-34WRKY family protein
Publications ? help Back to Top
  1. Zhou F, et al.
    High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression.
    Plant J., 2004. 39(6): p. 920-32
    [PMID:15341634]
  2. Liu XQ, et al.
    OsWRKY03, a rice transcriptional activator that functions in defense signaling pathway upstream of OsNPR1.
    Cell Res., 2005. 15(8): p. 593-603
    [PMID:16117849]
  3. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  4. Yi SY,Shirasu K,Moon JS,Lee SG,Kwon SY
    The activated SA and JA signaling pathways have an influence on flg22-triggered oxidative burst and callose deposition.
    PLoS ONE, 2014. 9(2): p. e88951
    [PMID:24586453]
  5. Cambiagno DA,Lonez C,Ruysschaert JM,Alvarez ME
    The synthetic cationic lipid diC14 activates a sector of the Arabidopsis defence network requiring endogenous signalling components.
    Mol. Plant Pathol., 2015. 16(9): p. 963-72
    [PMID:25727690]
  6. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  7. Li Y,Williams B,Dickman M
    Arabidopsis B-cell lymphoma2 (Bcl-2)-associated athanogene 7 (BAG7)-mediated heat tolerance requires translocation, sumoylation and binding to WRKY29.
    New Phytol., 2017. 214(2): p. 695-705
    [PMID:28032645]
  8. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]