PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK29842.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NF-YB

Protein Properties

Length: 165aa MW: 18590.8 Da PI: 5.7301

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK29842.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	162.2	7.3e-51	28	122	3	97
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +++r+lPianv+r+mk++lP nakisk+aket+qecvsef+sfvt+eas+kc+re+rkt+ngdd++wala lGf++y+ plk yl++yrele ek PK29842.1 28 QDQRLLPIANVGRMMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASEKCRRERRKTVNGDDVCWALAALGFDEYAGPLKRYLHRYRELEVEK 122 56799**************************************************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.8E-47	26	133	IPR009072	Histone-fold
SuperFamily	SSF47113	2.17E-37	29	139	IPR009072	Histone-fold
Pfam	PF00808	5.3E-26	32	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.5E-16	60	78	No hit	No description
PRINTS	PR00615	1.5E-16	79	97	No hit	No description
PRINTS	PR00615	1.5E-16	98	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MDKSIIGAGV SSNYNESSSD GVNRLVDQDQ RLLPIANVGR MMKQILPPNA KISKEAKETM 60 QECVSEFVSF VTGEASEKCR RERRKTVNGD DVCWALAALG FDEYAGPLKR YLHRYRELEV 120 EKSSSSININ NNNNNNNNLM VIRLNDQNIP AFHHYVSPND DDALL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-40	21	117	1	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021820118.1	3e-60	nuclear transcription factor Y subunit B-5
Swissprot	O82248	6e-53	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A2P5ERX2	4e-66	A0A2P5ERX2_TREOI; Nuclear transcription factor Y subunit B
STRING	evm.model.supercontig_287.4	5e-59	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	6e-55	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]