PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00000008-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 274aa    MW: 31550.8 Da    PI: 7.0186
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00000008-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.6e-1860110656
                       S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ eq + Le+ F++++++  e++ +LA++lgL+ rqV vW+qNrRa++k
  PSME_00000008-RA  60 RLSVEQMKSLETSFQMESKLGPERKMKLADELGLKPRQVAVWYQNRRARWK 110
                       6789**********************************************9 PP
2HD-ZIP_I/II113.31.5e-3657148293
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       k +rls eq+k+LE+sF++e+kL perK++la eLgl+prqvavW+qnrRAR+k+kqlEkdy+ Lk+ y + ++e+ +Le ev +L+eel++
  PSME_00000008-RA  57 KIKRLSVEQMKSLETSFQMESKLGPERKMKLADELGLKPRQVAVWYQNRRARWKAKQLEKDYHNLKKLYHTAVSEKGKLELEVLRLTEELHA 148
                       669************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-1744114IPR009057Homeodomain-like
PROSITE profilePS5007116.29352112IPR001356Homeobox domain
SMARTSM003896.2E-1554116IPR001356Homeobox domain
CDDcd000862.16E-1356113No hitNo description
Gene3DG3DSA:1.10.10.601.7E-1860119IPR009057Homeodomain-like
PfamPF000463.3E-1560110IPR001356Homeobox domain
PRINTSPR000314.7E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000314.7E-592108IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
YIDRLKLIMS FTFGNLDIPL MGKNPASSPA SIQPLYELCK YRNSYDEIGP DHEKEKKIKR  60
LSVEQMKSLE TSFQMESKLG PERKMKLADE LGLKPRQVAV WYQNRRARWK AKQLEKDYHN  120
LKKLYHTAVS EKGKLELEVL RLTEELHAMK QSRPGPKEIE QISTSDDSLN DTLMTPIGTT  180
DRPKSNNSCC SGAASKSKVH ATEFGLVIKS ERESPPQEVK LLQDNLSSAN DHKQTGQEAM  240
DDMTIMSDEF YNYFMVLDHH HEGYSTVYNF DWPN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKAKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1131840.0BT113184.1 Picea glauca clone GQ03326_O14 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-27homeobox protein 16