PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00000045-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

WOX

Protein Properties

Length: 257aa MW: 28855.5 Da PI: 8.632

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00000045-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65	1e-20	98	158	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++ ql++Le+ F + + +ps++++++++++l +++e++V++WFqNrRa+ k+ PSME_00000045-RA 98 RQRWTPSQVQLQILEKIFDQgKGTPSKQKIKDITAELsqhgHISETNVYNWFQNRRARTKR 158 89***************99************************************97 PP
2	Wus_type_Homeobox	98.5	5.2e-32	97	160	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtP++ Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR ++kq PSME_00000045-RA 97 ARQRWTPSQVQLQILEKIFDQGKGTPSKQKIKDITAELSQHGHISETNVYNWFQNRRARTKRKQ 160 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.511	94	159	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.1E-16	94	162	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.92E-17	96	161	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-13	96	163	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-18	98	158	IPR001356	Homeobox domain
CDD	cd00086	9.09E-13	98	160	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MRMEMISGSL RADMNGIGIG LVEGHHPLGF GMHRQAMTEQ QLETLRRQIC VYSTICYQLA 60 DMHKAIAGQH IEIHGYALGQ AIAFDPAMSI AGHKVTARQR WTPSQVQLQI LEKIFDQGKG 120 TPSKQKIKDI TAELSQHGHI SETNVYNWFQ NRRARTKRKQ QNVLPNTGES EMDNSLDSSK 180 DKKKMDDNSV QETHIMRQNS IGFQGYERVP IQQNADTQQC KSTVSFSSQA SSSALIDFAR 240 NASFEQGFSE TGLRHGC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	159	RRARTKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FM882156	9e-46	FM882156.1 Pinus sylvestris partial wox13 gene for putative wuschel homeobox protein WOX13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028759540.1	7e-70	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-58	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2I6ECC5	1e-125	A0A2I6ECC5_PINPS; WOXG protein
STRING	VIT_18s0122g01140.t01	1e-64	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-55	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]