PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00000085-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NF-YC
Protein Properties Length: 177aa    MW: 19560.7 Da    PI: 7.0952
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00000085-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC36.69.6e-12841622099
             NF-YC  20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                       ++P ar++++++++ d++  s ea  l+ ka e f+ ++ + s+ h  e +++ l    +a++v + + ++fl d vp++
  PSME_00000085-RA  84 AFPTARVRRVIRSEGDIRT-SLEATFLINKAAERFLEQFVVDSFEHILEETKSNLSYKPLASTVGNQKRYEFLADFVPEK 162
                       69***************85.99*******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008085.6E-685137IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.4E-1585161IPR009072Histone-fold
SuperFamilySSF471131.39E-11100162IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
VSVNFKFLPK MTATNSPKSD SSARSSSEFS EEQEKADEKP TPAKNPTDNG AHSSPNIADM  60
ENASAPTKHS HHKVPRPETP TTLAFPTARV RRVIRSEGDI RTSLEATFLI NKAAERFLEQ  120
FVVDSFEHIL EETKSNLSYK PLASTVGNQK RYEFLADFVP EKVKAADALA QRASAEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1120111e-156BT112011.1 Picea glauca clone GQ03308_M04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021831114.16e-27DNA polymerase epsilon subunit C
RefseqXP_024157006.15e-27chromatin accessibility complex protein 1
TrEMBLD5ACA91e-74D5ACA9_PICSI; Uncharacterized protein
STRINGXP_008225482.11e-25(Prunus mume)
STRINGXP_008358413.11e-25(Malus domestica)
STRINGXP_007132235.14e-26(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.13e-20nuclear factor Y, subunit C10